MmuINT0088299 @ mm9
Intron Retention
Gene
ENSMUSG00000030149 | Klrk1
Description
killer cell lectin-like receptor subfamily K, member 1 [Source:MGI Symbol;Acc:MGI:1196250]
Coordinates
chr6:129565327-129566350:-
Coord C1 exon
chr6:129566315-129566350
Coord A exon
chr6:129565479-129566314
Coord C2 exon
chr6:129565327-129565478
Length
836 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGT
5' ss Score
11.08
3' ss Seq
TTAATCTCATCTCTTTCTAGAGG
3' ss Score
9.43
Exon sequences
Seq C1 exon
TATTGTGCAACAAGGAAGTCCCAGTTTCCTCAAGAG
Seq A exon
GTAAGTGAATCTTTTTTTAATATTAAACACAAATTGCAAACATCTATGTGTATCAGGATTTACTAAATATTCAAAGGCATTCAAAATATTTATGATATAGTTAGATATATAGCACATAGTTCACTGTAGACTTTATTGCTTTTAACTGTGAAGGCTGTGAAATTGTTGGAAGAGAGTATTATGTTCCTTTTTTTCTGGCACTTAACACGCTAAAGTAGGAGGATCAGTAATTCACATCCCAGACTGGCTGTGTAGAAAGTTCAAAGCCAGAATGGGTTACATGAATCCCTGTCTAGAAACAGTAAATAAATAAAGAATAGTTTTGCTGTTTCTTATTATATTTTATTTTGTTGTATTTGGTTGATATCTCTTAGAAGCCTGCTATTATGTAATGAGAAACAGAAAGGAAGTGAATCTGGAGGAAAGGGAAGGTGGGGAGAAACTAGGAGGAGTAGGAAGAAAGGAAACTATTAATCAGGCTATAATGCGTGAGAAAATAATCTATTTTCAATAAAAAAATAGAAGGAAAAAGGGAAAGAAAGAAAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGGGTGAAGAAGGAAGAATAAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGAAATCTTTAGTTTGGGGACCTTCTTTTCTTCATATATAATGATTCGATGATTTAGAATTGGAACAGAAAGGGTATTTAACTTGCCTAGATGAGATCTGGTTCAATAGTCAAGTGTGTACAGGATTAATCTCATCTCTTTCTAG
Seq C2 exon
AGGGCTACTGTGGCCCATGCCCTAACAACTGGATATGTCACAGAAACAACTGTTACCAATTTTTTAATGAAGAGAAAACCTGGAACCAGAGCCAAGCTTCCTGTTTGTCTCAAAATTCCAGCCTTCTGAAGATATACAGTAAAGAAGAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030149-Klrk1:NM_001083322:5
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0005916=Lectin_C=PU(27.6=52.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: