Special

RnoEX0048294 @ rn6

Exon Skipping

Gene
ENSRNOG00000047145 | LOC102551340
Description
zinc finger protein 728-like [Source:RGD Symbol;Acc:7697243]
Coordinates
chr1:38528002-38538391:-
Coord C1 exon
chr1:38538296-38538391
Coord A exon
chr1:38533554-38533612
Coord C2 exon
chr1:38528002-38530008
Length
59 bp
Sequences
Splice sites
3' ss Seq
TTTCCTGTTTCTTTCTGTAGGCA
3' ss Score
11.9
5' ss Seq
TGGGTATGT
5' ss Score
7.43
Exon sequences
Seq C1 exon
GTCTTGCTTCCTGTAAGCCATATCTCGTCACATTTCTGGAGCAAATACAAGAGCCTTCAGATGTGAAGGGAAGAGCAACTACCACTATGCACCCAG
Seq A exon
GCACTCAGAGCTATGAGTTTTCCTCCTTGCACAGCTTTCATTGTGTCCCACAAGTTTGG
Seq C2 exon
GGGGAAAATGCTGTACCTGCAAAGTATGTGGCAGAGTCTTTGAGTGGACAAAAGTGTTTCAAAATCACCAGATAATTGATTTAGGAGTGAAGGGCTACGAGTGTGAAGAATGTACCAAGTACACCCATATTCCATCATTACTTCCTGAAGAGAAAACAATTCATACAGTAGAAAAACCTTACAAATGTGAAGTTTGTGGAAAGGCCTTCTGCATCCCATTATTACTTTCGAAACACAAGATAATTCATACAGAAGAGAATCCCTATAAGTGTGATTTGTGTGGCAAGGCCTTCCAACATCCTTCAAGACTTTCCAGACATAAGAAAATTCATTCAGGAGACAAACCATACAAGTGTGAAGTGTGTGGCAAGGCCTTCCACTTTCCATCGTTACTTTTGGTACACAAGAGAATTCATACTGGAGAAAAACCCTACAAGTGTGAAGTATGTGGCAAGGCCTTCCATTATCCATCAATACTCTCTAAACACAAGCGAATTCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000047145-'1-2,'1-1,2-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact





	

	
In the CDS, with uncertain impact





No structure available

		

			
Features


			

				
Disorder rate (Iupred):
  C1=0.101 A=0.000 C2=0.003
 
                        

				
Domain overlap (PFAM):

					





						

							
C1:
PF0135222=KRAB=PD(0.1=0.0)

							
A:
NO

							
C2:
PF134651=zf-H2C2_2=WD(100=3.1),PF134651=zf-H2C2_2=WD(100=3.9),PF0013017=C1_1=WD(100=7.6),PF134651=zf-H2C2_2=WD(100=3.7),PF134651=zf-H2C2_2=WD(100=3.9),PF0013017=C1_1=WD(100=7.8),PF134651=zf-H2C2_2=WD(100=3.6),PF134651=zf-H2C2_2=WD(100=3.7),PF134651=zf-H2C2_2=WD(100=3.7),PF134651=zf-H2C2_2=WD(100=3.9),PF0013017=C1_1=WD(100=7.3),PF134651=zf-H2C2_2=WD(100=3.9),PF134651=zf-H2C2_2=WD(100=3.9),PF134651=zf-H2C2_2=WD(100=3.9),PF134651=zf-H2C2_2=WD(100=3.9),PF134651=zf-H2C2_2=WD(100=3.6),PF134651=zf-H2C2_2=WD(100=3.9),PF0013017=C1_1=WD(100=7.8),PF134651=zf-H2C2_2=WD(100=3.9),PF134651=zf-H2C2_2=WD(100=3.7),PF134651=zf-H2C2_2=WD(100=3.6),PF134651=zf-H2C2_2=WD(100=3.7),PF134651=zf-H2C2_2=WD(100=3.9),PF134651=zf-H2C2_2=WD(100=4.0),PF0013017=C1_1=WD(100=7.8),PF134651=zf-H2C2_2=WD(100=3.9)

						

					

				








    
Main Inclusion Isoform:
ENSRNOT00000090406fB7578





     
                   









    
Main Skipping Isoform:
ENSRNOP00000071009





     
      









    
Other Inclusion Isoforms:
NA
          









    
Other Skipping Isoforms:
ENSRNOP00000066288
  



Associated events







Conservation


Human
(hg38)
NA:- 
Human
(hg19)
No conservation detected
Mouse
(mm10)
NA:- 
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected




Primers PCR

	

		

			
Suggestions for RT-PCR validation

			

				
F: 
AGCAACTACCACTATGCACCC

				
R: 
TCTTCACACTCGTAGCCCTTCA

				
Band lengths: 
132-191

			

		

	





	
Functional annotations
(Submit an annotation)

	


There are 0 annotated functions for this event 


		










GENOMIC CONTEXT[edit]












INCLUSION PATTERN[edit]











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