RnoEX0048295 @ rn6
Exon Skipping
Gene
ENSRNOG00000047145 | LOC102551340
Description
zinc finger protein 728-like [Source:RGD Symbol;Acc:7697243]
Coordinates
chr1:38526241-38538987:-
Coord C1 exon
chr1:38538834-38538987
Coord A exon
chr1:38527010-38530008
Coord C2 exon
chr1:38526241-38526335
Length
2999 bp
Sequences
Splice sites
3' ss Seq
TCCCAACCCTTCCTCACCAGGGG
3' ss Score
7.69
5' ss Seq
GTGGTAAGT
5' ss Score
10.36
Exon sequences
Seq C1 exon
GGTGTTTCCTCATTTTTTGTTTTTCAGGAAATGCTTTCATTCAGGGATGTGGCCATTGATTTCTCTGCAGAGGAGTGGGAATGCCTAGACCTTGCTCAGTGGAAATTGTACAGGGATGTGATGTTGGAGAATTACAACAACCTTGTATTCTTGG
Seq A exon
GGGGAAAATGCTGTACCTGCAAAGTATGTGGCAGAGTCTTTGAGTGGACAAAAGTGTTTCAAAATCACCAGATAATTGATTTAGGAGTGAAGGGCTACGAGTGTGAAGAATGTACCAAGTACACCCATATTCCATCATTACTTCCTGAAGAGAAAACAATTCATACAGTAGAAAAACCTTACAAATGTGAAGTTTGTGGAAAGGCCTTCTGCATCCCATTATTACTTTCGAAACACAAGATAATTCATACAGAAGAGAATCCCTATAAGTGTGATTTGTGTGGCAAGGCCTTCCAACATCCTTCAAGACTTTCCAGACATAAGAAAATTCATTCAGGAGACAAACCATACAAGTGTGAAGTGTGTGGCAAGGCCTTCCACTTTCCATCGTTACTTTTGGTACACAAGAGAATTCATACTGGAGAAAAACCCTACAAGTGTGAAGTATGTGGCAAGGCCTTCCATTATCCATCAATACTCTCTAAACACAAGCGAATTCATACAGGAGAGAAACCCTACAAGTGTGAAGTATGTGGCAAGGCCTTCCACATTTCTTCATTTCTTTCTAAACACAAAATAATTCATAGAGGAGAAAAACCATACAAGTGTGATGTATGTGGCAAGGCCTTCCATTATCCATCAAGACTTTCCAACCATAAGAAAATTCATTCAGGAGAGAAACCATACAAGTGTGAGGTATGTGGAAAGGCCTTCCGTATTTTATCACTACTTTCTAAGCACAAGATAATACATACAGAAGAAAATCCCTACAAGTGTGAAGTATGTGGCAAGGCTTTCGATTATCCATCAAGACTTTCTACCCATTCAAAAATGCATACAGAAGAGAAACCATACAAGTGTGAAGCCTGTGGAAAGGCCTTCCGCTCTCTGTCATCGCTTTCTAAACACAGGAGAATTCATACAGGAGATAATTACTATAACAGTGAAGTATGTGGTAAGGCTTTTATTTATCCTTTAAGACTTTCTAAACATAAGAAAATTTGTACAGGAGAGAAACCCTACAAGTGTGAAGTATGTGGCAAGGCCTTCAATGATTCATTAGTACTTTCTAAACATAGGGCGATTCATACAGGAGAAAAACTGTACAAGTGTGATGTATGTGGCAAGGCCTTCTATTATCCATCAAGACTTAACAATCATAGGAAGATTCATTCAGGAGAGAAACCATACCAGTGTGAAGAATGTGGCAAGGCGTTTTGTTTTCCATCATCACTATCTAAACACAAGAGAATTCACACAGGAGAGAAACCATACAAGTGTAAAGAATGTGACAAGGCCTTCCGCTCTCTGTCATCACTTTCTAAACATAGGAGAATTCATACAGGAGAGAAACCCTACAAGTGTGAAGTGTGTGGCAAAGCCTTCCACTACCCATCGTTACTTTCTAAACACAAAATAACTCATACAGAAGAAAAACCCTACAAGTGTGAAGTTTGTGGCCAGGGGTTCCATGTTCCATCAAAACTTTCTCATCACAAGATAATTCATACAGGAGAAAGCCCCTACAAGTGTGAAGTATGTGGCAAGGCTTTCTGCATTCCATTATTACTTTCTAAACACAAGATAAGTCATACAGGAGAGAATCACTCTAACAGTCAACTATCTAAGAAGGCCTTCATTTATCCTTCACGACTTTCTAAACATAAAAAGATTCATAAAAGAGTAAAACCATACAAGTGTGAAGTATGTGGAAAGGCCTTCCGCTTTCCATCATTACTATTAATACACAAGGGAATTCATACTGGAGAGAAACCATACAAGTGTGATGTGTGTGGCAAAGCCTTCTATTACCCATCATTACTTTGTCATCACAAGATAATTCATACAGGAGAAAAACCCTACAAGTGTGAAGTTTGTGGCAAGGCCTTCCATTATCCATCATTACTTTCTAAACACAAGATAATTCATACAGGAAAGAAACCCTACAAGTGTGAAGTATGTGGCAAAGCCTTCCATTATCCATCACGACTTTCCAAACATAAAAAAATTCATGGGGCTGGAGAGATGGCTCAGGAGTTAAGGGAACTGGCTACTCTTTCAGAGGTCCTGAGTTCAATTCCCAGCAACCACATGGTGGCTCACAACCATGTATGATGGAATCTGTTTCCTCTTATGCTATGTAGGTTTTCGTGCCAATAGAGCACTCATATAGATAAAATAAAAAATCATACAAACCATATTAGTGTGAAGTATGTGGCAATTACTTCCAATGTCCAGCATTATTTTCTAACCTCAAGAGAAGTCATTCAGAGAAACCCTGCAAGTATGAAGTATATATCCTGGCCTTCTGTTGTCCATAATTACTCTCTGAACACAGAATTCACACAGCAGAAAAACTTTACAATTGTTAAGGGCAAGTCAACTCCTTTAGAATTTGTCAGATTCTACTCATTTCAAACCAGACATATATGAGGAATGTGGAAAAGCAATCTCTACAAATATATACCAATGTTTACACAAATTAACTCACAATGTGGTGACATTTACAAATGCAAAGAACACGTCCAAATGCTCAACAAAAACATTAGGGGTCATCAAGAAATCCATTCTGCCTAGAAACCATACAAATCTAAAGAATGTGGCAAATACTTTAGAAGTTCCATGGCATGGTCCCAACTCAGGATAATTCCTACTGGAGAGAAACATTACAATTGGATAATGTGGCCAAAACTATTACCAGTCTTATGGTCTTAAGCAACAGTCAAGAATTTCTCTGTGAGAGAAACCACACAAGTCTGAAGAACATTCCAAGGTCTTTTTTTACTTACTAAGAACTTGTGAAAAACCTCATAATTCCACCTAATAATTCCACATGTGAAAAATGTTGCAAACCCTTGAGTGAACTTTCTTATATTTCTCAACACAAGATAGTTCAAACTGGAGTGAAATAATACAAATGTTAATATGTTAGCACATCTACAAACCCTAAAAGTTAGCAGCTTCCTGCTTAATAGAAACCATACAAGATTGACAAATGTG
Seq C2 exon
TTTAATGGACAACAGAAGATCTGGTGATTGTGCTTGGAAGCATAAGCTGGAAATGCTGCAGTATAAGAAAATACCCTGATAACAACTATTCATCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000047145_MULTIEX1-2/2=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.004 C2=NA
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=78.8)
A:
PF134651=zf-H2C2_2=WD(100=3.1),PF134651=zf-H2C2_2=WD(100=3.9),PF0013017=C1_1=WD(100=7.6),PF134651=zf-H2C2_2=WD(100=3.7),PF134651=zf-H2C2_2=WD(100=3.9),PF0013017=C1_1=WD(100=7.8),PF134651=zf-H2C2_2=WD(100=3.6),PF134651=zf-H2C2_2=WD(100=3.7),PF134651=zf-H2C2_2=WD(100=3.7),PF134651=zf-H2C2_2=WD(100=3.9),PF0013017=C1_1=WD(100=7.3),PF134651=zf-H2C2_2=WD(100=3.9),PF134651=zf-H2C2_2=WD(100=3.9),PF134651=zf-H2C2_2=WD(100=3.9),PF134651=zf-H2C2_2=WD(100=3.9),PF134651=zf-H2C2_2=WD(100=3.6),PF134651=zf-H2C2_2=WD(100=3.9),PF0013017=C1_1=WD(100=7.8),PF134651=zf-H2C2_2=WD(100=3.9),PF134651=zf-H2C2_2=WD(100=3.7),PF134651=zf-H2C2_2=WD(100=3.6),PF134651=zf-H2C2_2=WD(100=3.7),PF134651=zf-H2C2_2=WD(100=3.9),PF134651=zf-H2C2_2=WD(100=4.0),PF0013017=C1_1=WD(100=7.8),PF134651=zf-H2C2_2=WD(100=3.9)
C2:
NA
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]