RnoEX0048410 @ rn6
Exon Skipping
Gene
ENSRNOG00000009300 | LOC103690017
Description
serine/threonine-protein kinase tousled-like 1 [Source:RGD Symbol;Acc:9355222]
Coordinates
chr3:57363863-57376336:-
Coord C1 exon
chr3:57376265-57376336
Coord A exon
chr3:57375100-57375167
Coord C2 exon
chr3:57363863-57363938
Length
68 bp
Sequences
Splice sites
3' ss Seq
TCAGGCTTTCCCTTCCACAGAGA
3' ss Score
8.57
5' ss Seq
GAGGTAAGC
5' ss Score
9.85
Exon sequences
Seq C1 exon
GCTTCAACAAATAATGAAAGTTCTAATCACAGTTTTGGAAGCTTAGGATCTCTAAGTGACAAAGAATCAGAG
Seq A exon
AGACAACTGGCAGGCAGCTGAAAGGACTGTGCAAGTGACGGACTTTATCTGCAGTAGGTTCCCTTGAG
Seq C2 exon
ACACCAGAGAAGAAACAATCTGAGTCATCCAGGGGAAGAAAGAGAAAAGCAGAAAGTCAGAATGAAAGTAGTCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000009300_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGAAAGTTCTAATCACAGTTTTGGA
R:
CCTGACTACTTTCATTCTGACTTTCT
Band lengths:
135-203
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]