RnoEX0003014 @ rn6
Exon Skipping
Gene
ENSRNOG00000009382 | AABR07052486.1
Description
NA
Coordinates
chr3:57260155-57572093:-
Coord C1 exon
chr3:57571981-57572093
Coord A exon
chr3:57570303-57570352
Coord C2 exon
chr3:57260155-57260261
Length
50 bp
Sequences
Splice sites
3' ss Seq
TTGTTTATTCTCAATTTTAGGTT
3' ss Score
12.25
5' ss Seq
GCAGTGAGT
5' ss Score
7.39
Exon sequences
Seq C1 exon
AACCTGGGAGCAGAGAAAGGTCTGCTTCTAACCCTGACTTGGAAGAATACAGCAGAGGACCCAGGAAGGCAGAGCAGTTTCCTGGTAGCAAGGCTACTTTTCGAATACTAGAG
Seq A exon
GTTGGCTGTGGTGCTGGAAATAGCGTGTTTCCAATCCTGAACACCTTGCA
Seq C2 exon
GATGCAAGCTGTCATCCACCGGCTGTCCAGGTTGCTGAAGCCCGGAGGAATGCTATTGTTTCGGGATCATGGAAGATACGACAATGCTCAGCTTCGCTTTAAAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000009382_MULTIEX1-4/6=3-C2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.632 A=0.088 C2=0.000
Domain overlap (PFAM):
C1:
PF0196912=DUF111=PU(27.6=42.1)
A:
NO
C2:
PF082417=Methyltransf_11=PD(22.5=55.6)
Main Inclusion Isoform:
ENSRNOT00000076202fB145
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACCTGGGAGCAGAGAAAGGT
R:
CGGTGGATGACAGCTTGCATC
Band lengths:
134-184
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]