RnoEX0003008 @ rn6
Exon Skipping
Gene
ENSRNOG00000009382 | AABR07052486.1
Description
NA
Coordinates
chr3:57267207-57314402:-
Coord C1 exon
chr3:57314302-57314402
Coord A exon
chr3:57269973-57270036
Coord C2 exon
chr3:57267207-57267346
Length
64 bp
Sequences
Splice sites
3' ss Seq
CGTCCTTTATATTTGCGTAGGAA
3' ss Score
7.75
5' ss Seq
AAGGTATGT
5' ss Score
9.79
Exon sequences
Seq C1 exon
GTCAATAGCATATTTACCTTCAAATGTACTCATCTTTGCCTCTGGCCAGCAATGTCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
Seq A exon
GAACATCCCAGGATCCTTTCTTTACTGCTGTGACTTCGCCCCTGAAGCAGTGGAGCTCGTAAAG
Seq C2 exon
TCACATGAGGCCTACAGCGAGGCCCACTGTTCTGCCTTTATTCATGACGTGTGTGACGACGGCTTGGCCTACCCTTTTCCAGACGGGACCCTGGACGTCATTCTCCTTGTCTTTGTGCTCTCTTCTATTCACCCTGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000009382-'19-11,'19-10,20-11
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
PF082417=Methyltransf_11=PU(23.6=95.5)
C2:
PF082417=Methyltransf_11=FE(51.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTCTGGCCAGCAATGTCTTT
R:
CTGGAAAAGGGTAGGCCAAGC
Band lengths:
145-209
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]