BtaEX6009090 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000016430 | METTL8
Description
Bos taurus methyltransferase like 8 (METTL8), mRNA. [Source:RefSeq mRNA;Acc:NM_001075288]
Coordinates
chr2:25142248-25149893:+
Coord C1 exon
chr2:25142248-25142297
Coord A exon
chr2:25147865-25147928
Coord C2 exon
chr2:25149754-25149893
Length
64 bp
Sequences
Splice sites
3' ss Seq
TATTTCTTCCTTTTTCATAGGAA
3' ss Score
9.53
5' ss Seq
AAGGTATGC
5' ss Score
9.55
Exon sequences
Seq C1 exon
GTTGGCTGTGGTGCTGGGAATAGTGTTTTTCCAATTCTGAACACTTTGCA
Seq A exon
GAATGTGCCGGAGTTCTTTCTTTATTGTTGTGATTTTGCTTCTGGAGCTGTGGAGCTAGTAAAG
Seq C2 exon
TCTCATGCATCGTACAGAGCAGCCCAGTGCTGTGCCTTTGTTCATGACGTTTGTGACCATGGCTTACCCTACCCTTTTCCGGATGGGACCCTGGATGTCATTCTCCTAGTCTTTGTTCTGTCTTCTATTCATCCTGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016430-'16-19,'16-17,18-19=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF134891=Methyltransf_23=FE(8.6=100)
A:
PF134891=Methyltransf_23=FE(11.3=100)
C2:
PF134891=Methyltransf_23=FE(24.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGTGGTGCTGGGAATAGTG
R:
TCCCATCCGGAAAAGGGTAGG
Band lengths:
134-198
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]