HsaEX0038941 @ hg19
Exon Skipping
Gene
ENSG00000123600 | METTL8
Description
methyltransferase like 8 [Source:HGNC Symbol;Acc:25856]
Coordinates
chr2:172182552-172194012:-
Coord C1 exon
chr2:172193963-172194012
Coord A exon
chr2:172188275-172188377
Coord C2 exon
chr2:172182552-172182658
Length
103 bp
Sequences
Splice sites
3' ss Seq
TATTTCTTCCATCTTCATAGGAA
3' ss Score
9.3
5' ss Seq
AAGGTATTA
5' ss Score
7.04
Exon sequences
Seq C1 exon
GTTGGTTGTGGAGCTGGAAATAGTGTGTTTCCAATTTTGAACACTTTGGA
Seq A exon
GAACTCTCCGGAGTCCTTTCTGTATTGTTGTGATTTTGCTTCTGGAGCTGTGGAGCTCGTAAAGGTATGCTACTCCTGGGAATCATACCAACTGATGCCTAAG
Seq C2 exon
GATGCAAGGTGTTGTAAACCGACTGTCCAAGTTACTGAAACCTGGGGGAATGCTGTTATTTCGAGACTATGGAAGATATGATAAGACTCAGCTTCGTTTTAAAAAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000123600_MULTIEX1-7/9=6-9
Average complexity
C3*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF082427=Methyltransf_12=FE(15.2=100)
A:
PF082427=Methyltransf_12=FE(20.0=100)
C2:
PF082427=Methyltransf_12=PD(17.1=48.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTGGTTGTGGAGCTGGAAAT
R:
CCTTTTTAAAACGAAGCTGAGTCT
Band lengths:
157-260
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)