GgaEX0014150 @ galGal3
Exon Skipping
Gene
ENSGALG00000009564 | METTL8
Description
NA
Coordinates
chr7:19506024-19508983:+
Coord C1 exon
chr7:19506024-19506073
Coord A exon
chr7:19508450-19508513
Coord C2 exon
chr7:19508844-19508983
Length
64 bp
Sequences
Splice sites
3' ss Seq
ATGGTGGTTTGTTTTTCTAGCAA
3' ss Score
6.32
5' ss Seq
AAGGTAATT
5' ss Score
8.83
Exon sequences
Seq C1 exon
GTTGGTTGTGGTGCTGGAAATAGTGTATTTCCTATTTTGAAAGTTCTGTG
Seq A exon
CAATACACCTGGAACCTTTCTGTACTGTTGTGATTTTGCTTCAGGAGCAGTGGAGCTCGTAAAG
Seq C2 exon
TCACATTCGTCCTACAATTCAGCCTGGTGTTCTGCCTTTGTTCATGATGTGTGTGATGATGCTTTACCCTATCCTTTTCCAGATGAGATCCTGGATGTCATTCTCCTTGTCTTTGTGCTCTCAACTATTCATCCTGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009564-'5-6,'5-5,6-6
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF134891=Methyltransf_23=FE(8.5=100)
A:
PF134891=Methyltransf_23=FE(11.1=100)
C2:
PF134891=Methyltransf_23=FE(24.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGTTGTGGTGCTGGAAATAGT
R:
TGACATCCAGGATCTCATCTGGA
Band lengths:
148-212
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]