HsaEX0038941 @ hg38
Exon Skipping
Gene
ENSG00000123600 | METTL8
Description
methyltransferase like 8 [Source:HGNC Symbol;Acc:HGNC:25856]
Coordinates
chr2:171330559-171337502:-
Coord C1 exon
chr2:171337453-171337502
Coord A exon
chr2:171331804-171331867
Coord C2 exon
chr2:171330559-171330698
Length
64 bp
Sequences
Splice sites
3' ss Seq
TATTTCTTCCATCTTCATAGGAA
3' ss Score
9.3
5' ss Seq
AAGGTATGC
5' ss Score
9.55
Exon sequences
Seq C1 exon
GTTGGTTGTGGAGCTGGAAATAGTGTGTTTCCAATTTTGAACACTTTGGA
Seq A exon
GAACTCTCCGGAGTCCTTTCTGTATTGTTGTGATTTTGCTTCTGGAGCTGTGGAGCTCGTAAAG
Seq C2 exon
TCACACTCGTCCTACAGAGCAACCCAGTGTTTTGCCTTTGTTCATGATGTATGTGATGATGGCTTACCTTACCCTTTTCCAGATGGGATCCTGGATGTCATTCTCCTTGTCTTTGTGCTCTCTTCTATTCATCCTGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000123600-'19-27,'19-26,21-27
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF082427=Methyltransf_12=FE(15.2=100)
A:
PF082427=Methyltransf_12=FE(20.0=100)
C2:
PF082427=Methyltransf_12=FE(43.8=100)
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTTGTGGAGCTGGAAATAGTGT
R:
TGACATCCAGGATCCCATCTGG
Band lengths:
147-211
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development