DreEX0046147 @ danRer10
Exon Skipping
Gene
ENSDARG00000017359 | mettl8
Description
methyltransferase like 8 [Source:ZFIN;Acc:ZDB-GENE-041114-19]
Coordinates
chr9:3553091-3557968:+
Coord C1 exon
chr9:3553091-3553140
Coord A exon
chr9:3555643-3555703
Coord C2 exon
chr9:3557829-3557968
Length
61 bp
Sequences
Splice sites
3' ss Seq
TGTTTTGTTTAATATTTCAGAGG
3' ss Score
7.67
5' ss Seq
CAGGTAAAA
5' ss Score
8.59
Exon sequences
Seq C1 exon
GTGGGCTGTGGTGCAGGTAACAGCGTGTTTCCCATCATCAACACCATCAG
Seq A exon
AGGCAGTAAGGCGTTTCTGTACTGCTGTGACTTCTCATCTCGAGCGATTGAGCTCATCCAG
Seq C2 exon
AAGCATCCAGACTATGACCCTGCAGTGTGTCACGCATTCGTACGGGACATTTGTGACGCAACGTCCCCGTTTCCCTTCCCTCCTGAGAGTTTGGACATTATTCTGGTGGTCTTTGTGCTCTCTGCCATCCACCCAGCACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000017359-'8-10,'8-9,9-10
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF134891=Methyltransf_23=FE(6.8=100)
A:
PF134891=Methyltransf_23=FE(8.5=100)
C2:
PF134891=Methyltransf_23=FE(19.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGGTAACAGCGTGTTTCCCA
R:
TGTCCAAACTCTCAGGAGGGA
Band lengths:
134-195
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]