MmuEX6090407 @ mm9
Exon Skipping
Gene
ENSMUSG00000020691 | Mettl2
Description
methyltransferase like 2 [Source:MGI Symbol;Acc:MGI:1289171]
Coordinates
chr11:104991761-104993894:+
Coord C1 exon
chr11:104991761-104991810
Coord A exon
chr11:104992887-104992947
Coord C2 exon
chr11:104993755-104993894
Length
61 bp
Sequences
Splice sites
3' ss Seq
CTTTTTTCTGCCTGTTTCAGTAA
3' ss Score
9.62
5' ss Seq
AAGGTAGGT
5' ss Score
10.29
Exon sequences
Seq C1 exon
GTTGGTTGTGGTGTAGGAAACACAGTCTTTCCAATTTTACAAACTAACAA
Seq A exon
TAACCCAAACCTCTTCGTTTACTGTTGTGACTTTTCTGCCACGGCTATTGAACTGCTCAAG
Seq C2 exon
ACAAATTCACAATATGATCCTTCTCGCTGTTATGCCTTTGTTCATGATCTCTGTGATGAAGATCAGAGTTACCCAGTGCCTGAGGACAGTCTTGATGTCATCGTTCTTATATTTGTTCTTTCAGCAATTGTTCCAGACAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000020691-'6-7,'6-6,8-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF134891=Methyltransf_23=FE(8.6=100)
A:
PF134891=Methyltransf_23=FE(10.7=100)
C2:
PF134891=Methyltransf_23=FE(24.6=100),PF110413=DUF2612=PU(65.1=87.2)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGGTTGTGGTGTAGGAAACA
R:
GACATCAAGACTGTCCTCAGG
Band lengths:
148-209
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: