DreEX6016084 @ danRer10
Exon Skipping
Gene
ENSDARG00000008105 | mettl2a
Description
methyltransferase like 2A [Source:ZFIN;Acc:ZDB-GENE-050417-462]
Coordinates
chr3:19526878-19527291:+
Coord C1 exon
chr3:19526878-19526927
Coord A exon
chr3:19527003-19527063
Coord C2 exon
chr3:19527152-19527291
Length
61 bp
Sequences
Splice sites
3' ss Seq
TTTTCCTTCCTGCCTTACAGTGA
3' ss Score
10.59
5' ss Seq
AAAGTAAGT
5' ss Score
9.72
Exon sequences
Seq C1 exon
GTGGGCTGTGGAGTAGGCAATACAGTCTTTCCCATCTTAAAAACCAACAA
Seq A exon
TGACCCAGGACTCTTTGTTTACTGTTGTGATTTCTCCAGCACAGCTGTAGACCTCGTCAAA
Seq C2 exon
TCAAATCCTGAGTATGACCCATCACGCTGTCATGCATTTGTCCATGATATGAGTGATGAATCTGGAGAGTATCCCATGCCAGATCACAGTCTGGACGTCATCGTCCTCATATTTGTGCTGTCCGCTCTGCACCCTGAGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000008105-'5-8,'5-5,6-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF082427=Methyltransf_12=FE(15.4=100)
A:
PF082427=Methyltransf_12=FE(19.2=100)
C2:
PF082427=Methyltransf_12=FE(44.2=100),PF118993=DUF3419=PU(37.5=70.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGGCTGTGGAGTAGGCAATA
R:
AGACTGTGATCTGGCATGGGA
Band lengths:
141-202
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]