GgaEX6027257 @ galGal4
Exon Skipping
Gene
ENSGALG00000000396 | METTL2A
Description
Methyltransferase-like protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q5ZHP8]
Coordinates
chr27:2338753-2340298:+
Coord C1 exon
chr27:2338753-2338802
Coord A exon
chr27:2339264-2339324
Coord C2 exon
chr27:2340159-2340298
Length
61 bp
Sequences
Splice sites
3' ss Seq
GTGTCCTTTATTTATTTCAGTGA
3' ss Score
8.4
5' ss Seq
CAGGTAAGC
5' ss Score
9.88
Exon sequences
Seq C1 exon
GTTGGCTGTGGTGCTGGAAATACAGTCTTCCCAATTTTACAAACCAACAA
Seq A exon
TGACCCAGGCCTTTTTGTTTATTGCTGTGACTTTTCTACTACAGCTGTGGATCTTGTCCAG
Seq C2 exon
AGCAATGTGGAATATGATTCTTCTCGCTGCTTTGCATTTGTCCATGACCTCTGCAATGACCAAAGTCCTTTCCCAATGCCAGATGAAAGCCTTGACATTGTCATTCTCATCTTTGTCCTCTCAGCGATTCTCCCAGAGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000396-'12-9,'12-7,13-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF134891=Methyltransf_23=FE(8.4=100)
A:
PF134891=Methyltransf_23=FE(10.5=100)
C2:
PF134891=Methyltransf_23=FE(24.1=100),PF118993=DUF3419=PU(30.3=57.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCTGTGGTGCTGGAAATACA
R:
AGGCTTTCATCTGGCATTGGG
Band lengths:
139-200
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]