RnoEX6050059 @ rn6
Exon Skipping
Gene
ENSRNOG00000006131 | Mettl2b
Description
methyltransferase like 2B [Source:RGD Symbol;Acc:1310240]
Coordinates
chr10:93357974-93360500:+
Coord C1 exon
chr10:93357974-93358023
Coord A exon
chr10:93359727-93359787
Coord C2 exon
chr10:93360361-93360500
Length
61 bp
Sequences
Splice sites
3' ss Seq
CTTTTTTCTCCCTGTTTCAGTAA
3' ss Score
10.73
5' ss Seq
AAGGTAAGT
5' ss Score
11
Exon sequences
Seq C1 exon
GTTGGCTGTGGTGTAGGAAACACAGTCTTTCCGATTTTACAAACTAACAA
Seq A exon
TAACCCAGACCTCTTCGTTTACTGTTGTGACTTTTCTGCCACAGCTATTGAACTGGTCAAG
Seq C2 exon
ACAAATTCAGAATATGATCCTTCCCGCTGTTTTGCCTTTGTTCATGATCTCTGTGATGAAGATCAGAGTTACCCAATGCCCAAGGACAGTCTTGATGTCATCGTTCTTATATTTGTTCTTTCCGCAATTGTTCCAGACAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000006131-'3-7,'3-6,5-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF134891=Methyltransf_23=FE(8.5=100)
A:
PF134891=Methyltransf_23=FE(10.6=100)
C2:
PF134891=Methyltransf_23=FE(24.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTGGCTGTGGTGTAGGAAACA
R:
ACTGTCCTTGGGCATTGGGTA
Band lengths:
140-201
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]