GgaEX6027257 @ galGal3
Exon Skipping
Gene
ENSGALG00000000396 | METTL2A
Description
NA
Coordinates
chr27:2245386-2246931:+
Coord C1 exon
chr27:2245386-2245435
Coord A exon
chr27:2245897-2245957
Coord C2 exon
chr27:2246792-2246931
Length
61 bp
Sequences
Splice sites
3' ss Seq
GTGTCCTTTATTTATTTCAGTGA
3' ss Score
8.4
5' ss Seq
CAGGTAAGC
5' ss Score
9.88
Exon sequences
Seq C1 exon
GTTGGCTGTGGTGCTGGAAATACAGTCTTCCCAATTTTACAAACCAACAA
Seq A exon
TGACCCAGGCCTTTTTGTTTATTGCTGTGACTTTTCTACTACAGCTGTGGATCTTGTCCAG
Seq C2 exon
AGCAATGTGGAATATGATTCTTCTCGCTGCTTTGCATTTGTCCATGACCTCTGCAATGACCAAAGTCCTTTCCCAATGCCAGATGAAAGCCTTGACATTGTCATTCTCATCTTTGTCCTCTCAGCGATTCTCCCAGAGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000396-'9-7,'9-6,10-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF082427=Methyltransf_12=FE(15.5=100)
A:
PF134891=Methyltransf_23=FE(10.5=100)
C2:
PF134891=Methyltransf_23=FE(24.1=100),PF118993=DUF3419=PU(28.1=57.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCTGTGGTGCTGGAAATACA
R:
AGGCTTTCATCTGGCATTGGG
Band lengths:
139-200
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]