RnoEX0003009 @ rn6
Exon Skipping
Gene
ENSRNOG00000009382 | AABR07052486.1
Description
NA
Coordinates
chr3:57260155-57314402:-
Coord C1 exon
chr3:57314302-57314402
Coord A exon
chr3:57267207-57267346
Coord C2 exon
chr3:57260155-57260261
Length
140 bp
Sequences
Splice sites
3' ss Seq
TTGTTCCTCCACCCTGACAGTCA
3' ss Score
6.78
5' ss Seq
CAGGTAAAT
5' ss Score
8.76
Exon sequences
Seq C1 exon
GTCAATAGCATATTTACCTTCAAATGTACTCATCTTTGCCTCTGGCCAGCAATGTCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
Seq A exon
TCACATGAGGCCTACAGCGAGGCCCACTGTTCTGCCTTTATTCATGACGTGTGTGACGACGGCTTGGCCTACCCTTTTCCAGACGGGACCCTGGACGTCATTCTCCTTGTCTTTGTGCTCTCTTCTATTCACCCTGACAG
Seq C2 exon
GATGCAAGCTGTCATCCACCGGCTGTCCAGGTTGCTGAAGCCCGGAGGAATGCTATTGTTTCGGGATCATGGAAGATACGACAATGCTCAGCTTCGCTTTAAAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000009382-'19-14,'19-11,21-14
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
PF082417=Methyltransf_11=FE(51.7=100)
C2:
PF082417=Methyltransf_11=PD(22.5=55.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCTTCAAATGTACTCATCTTTGCCT
R:
GCTGAGCATTGTCGTATCTTCCA
Band lengths:
178-318
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]