GgaEX1035993 @ galGal4
Exon Skipping
Gene
ENSGALG00000009564 | METTL8
Description
methyltransferase like 8 [Source:HGNC Symbol;Acc:HGNC:25856]
Coordinates
chr7:17556109-17559919:+
Coord C1 exon
chr7:17556109-17556172
Coord A exon
chr7:17556503-17556642
Coord C2 exon
chr7:17559813-17559919
Length
140 bp
Sequences
Splice sites
3' ss Seq
TTTTATCTTTTTCCCGACAGTCA
3' ss Score
10.14
5' ss Seq
CAGGTAAAT
5' ss Score
8.76
Exon sequences
Seq C1 exon
CAATACACCTGGAACCTTTCTGTACTGTTGTGATTTTGCTTCAGGAGCAGTGGAGCTCGTAAAG
Seq A exon
TCACATTCGTCCTACAATTCAGCCTGGTGTTCTGCCTTTGTTCATGATGTGTGTGATGATGCTTTACCCTATCCTTTTCCAGATGAGATCCTGGATGTCATTCTCCTTGTCTTTGTGCTCTCAACTATTCATCCTGACAG
Seq C2 exon
GATGCAACAGGTTGTAAATAGATTGGTTAAACTACTGAAACCTGGAGGGATACTGTTATTTCGAGACTATGGAAGATACGATACAGCTCAACTTCGTTTTAAAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009564-'15-20,'15-14,16-20
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF134891=Methyltransf_23=FE(11.2=100)
A:
PF134891=Methyltransf_23=FE(24.5=100)
C2:
PF134891=Methyltransf_23=FE(19.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACCTGGAACCTTTCTGTACTGT
R:
ACGAAGTTGAGCTGTATCGTATCT
Band lengths:
156-296
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]