MmuEX6102070 @ mm10
Exon Skipping
Gene
ENSMUSG00000041975 | Mettl8
Description
methyltransferase like 8 [Source:MGI Symbol;Acc:MGI:2385142]
Coordinates
chr2:70967050-70976137:-
Coord C1 exon
chr2:70976074-70976137
Coord A exon
chr2:70973253-70973392
Coord C2 exon
chr2:70967050-70967156
Length
140 bp
Sequences
Splice sites
3' ss Seq
TCCTCCATCCGTCCTGACAGTCC
3' ss Score
8.59
5' ss Seq
CAGGTAAAT
5' ss Score
8.76
Exon sequences
Seq C1 exon
GAACATTCCAGGATCCTTTCTCTACTGCTGCGACTTTGCCTCTGAAGCTGTGGAACTTGTAAAG
Seq A exon
TCCCACGAGTCCTACAGCGAGGCCCAGTGTTCTGCCTTTATTCATGACGTGTGTGACGACGGCTTAGCCTACCCTTTCCCAGATGGGATCCTGGATGTCGTTCTCCTTGTCTTTGTGCTCTCATCTATCCACCCTGACAG
Seq C2 exon
GATGCAAGCTGTTGCCCACCGACTGTCCAGGTTGCTGAAGCCCGGAGGAATGCTATTGTTTCGGGATCATGGAAGATACGATAATGCTCAGCTTCGTTTTAAGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000041975-'14-26,'14-22,15-26=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.025 C2=0.000
Domain overlap (PFAM):
C1:
PF134891=Methyltransf_23=FE(11.1=100)
A:
PF134891=Methyltransf_23=FE(24.2=100)
C2:
PF082417=Methyltransf_11=PD(30.8=55.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAACATTCCAGGATCCTTTCTCT
R:
CTTTCTTAAAACGAAGCTGAGCA
Band lengths:
171-311
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types