RnoEX0003015 @ rn6
Exon Skipping
Gene
ENSRNOG00000009382 | AABR07052486.1
Description
NA
Coordinates
chr3:57260155-57267346:-
Coord C1 exon
chr3:57267207-57267346
Coord A exon
chr3:57265585-57265693
Coord C2 exon
chr3:57260155-57260261
Length
109 bp
Sequences
Splice sites
3' ss Seq
TCTCCCCTCTGTTTCTACAGTGT
3' ss Score
10.4
5' ss Seq
TAGGTAGTT
5' ss Score
3.85
Exon sequences
Seq C1 exon
TCACATGAGGCCTACAGCGAGGCCCACTGTTCTGCCTTTATTCATGACGTGTGTGACGACGGCTTGGCCTACCCTTTTCCAGACGGGACCCTGGACGTCATTCTCCTTGTCTTTGTGCTCTCTTCTATTCACCCTGACAG
Seq A exon
TGTATTTCTTTGCTGATGATATGTTCATCTGTTGGCGCTGCTGCCGAAGAGTCAAGATGTCACCTCTGTGCTCCGCTTCCTTCTGTGACTGGTTAAAAGACTGGCCTAG
Seq C2 exon
GATGCAAGCTGTCATCCACCGGCTGTCCAGGTTGCTGAAGCCCGGAGGAATGCTATTGTTTCGGGATCATGGAAGATACGACAATGCTCAGCTTCGCTTTAAAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000009382_MULTIEX1-6/6=5-C2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF082417=Methyltransf_11=FE(51.7=100)
A:
PF082417=Methyltransf_11=PD(5.5=66.7)
C2:
PF082417=Methyltransf_11=PD(22.5=55.6)
Main Inclusion Isoform:
ENSRNOT00000075860fB146
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCACATGAGGCCTACAGCGAG
R:
CGAAGCTGAGCATTGTCGTATCT
Band lengths:
236-345
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]