RnoEX6017365 @ rn6
Exon Skipping
Gene
ENSRNOG00000009382 | AABR07052486.1
Description
NA
Coordinates
chr3:57257394-57267346:-
Coord C1 exon
chr3:57267207-57267346
Coord A exon
chr3:57260155-57260261
Coord C2 exon
chr3:57257394-57259219
Length
107 bp
Sequences
Splice sites
3' ss Seq
ATCTTGCTTTGTTTTCAAAGGAT
3' ss Score
7.56
5' ss Seq
AAGGTAACG
5' ss Score
10.19
Exon sequences
Seq C1 exon
TCACATGAGGCCTACAGCGAGGCCCACTGTTCTGCCTTTATTCATGACGTGTGTGACGACGGCTTGGCCTACCCTTTTCCAGACGGGACCCTGGACGTCATTCTCCTTGTCTTTGTGCTCTCTTCTATTCACCCTGACAG
Seq A exon
GATGCAAGCTGTCATCCACCGGCTGTCCAGGTTGCTGAAGCCCGGAGGAATGCTATTGTTTCGGGATCATGGAAGATACGACAATGCTCAGCTTCGCTTTAAAAAAG
Seq C2 exon
GGCGTTGTTTATCTGAAAATTTTTACGTCCGAGGGGATGGTACCAGAGCCTATTTCTTTACAAAAGGTAGGCCGATCTGTCTAGCCTGGGGTAACAGTGAGCTGTAAACCTCCTCAGGTAGCTGTTGGCAGGGACACACTCAGAGGCTGTGAGCGCGAGGCCTCGGGGCAGACCTGCAGACTGAACACCAGAAGTCTTCACGCCCTGACAAACTGTGTTTAAAGAGTTGTGTCCCTCTTACACTGGTGTGAAGGTGCAGGGAGTAAGTTGGGAGTTAGTGATGGCCTGGGTATGAACGACGCTGATGTGCCCAGAGGAAGGAACTTTAGTTCTACAGAAATTAGATCTCAGTAGTCGGTTTCTTGTCGTAAGTAAGCACCGCTGACATCACTGGGTGAACCATGGACTCAGGGGTTTCCCAAACCTGACAGAGCCTTTTACACTGTGTGATCTCGGGTCACTGTAAGCAAAGGCTCAGAAAGGAGGCACATGTCACATGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000009382-'21-15,'21-14,25-15=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF082417=Methyltransf_11=FE(51.7=100)
A:
PF082417=Methyltransf_11=PD(22.5=55.6)
C2:
NO
Main Skipping Isoform:
ENSRNOT00000075860fB146
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCCTGGACGTCATTCTCCTT
R:
GGTGTTCAGTCTGCAGGTCTG
Band lengths:
242-349
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]