MmuEX6102072 @ mm10
Exon Skipping
Gene
ENSMUSG00000041975 | Mettl8
Description
methyltransferase like 8 [Source:MGI Symbol;Acc:MGI:2385142]
Coordinates
chr2:70964561-70973392:-
Coord C1 exon
chr2:70973253-70973392
Coord A exon
chr2:70967050-70967156
Coord C2 exon
chr2:70964561-70965679
Length
107 bp
Sequences
Splice sites
3' ss Seq
ATCTTACTTTGTTTTCAAAGGAT
3' ss Score
7.7
5' ss Seq
AAGGTAATA
5' ss Score
8.49
Exon sequences
Seq C1 exon
TCCCACGAGTCCTACAGCGAGGCCCAGTGTTCTGCCTTTATTCATGACGTGTGTGACGACGGCTTAGCCTACCCTTTCCCAGATGGGATCCTGGATGTCGTTCTCCTTGTCTTTGTGCTCTCATCTATCCACCCTGACAG
Seq A exon
GATGCAAGCTGTTGCCCACCGACTGTCCAGGTTGCTGAAGCCCGGAGGAATGCTATTGTTTCGGGATCATGGAAGATACGATAATGCTCAGCTTCGTTTTAAGAAAG
Seq C2 exon
GGGAAATCCGCCGTATGTTCTGCGAGGCTGGATTACACGAAAAGCAAAATCTGGTTGATCATCGCTTGCAAGTGAACAGGAAAAAGCAAGTGCAGATGCACCGAGTGTGGATTCAAGGAAAATTCCAGAAACCATCGCCCTGGACTCCACAGAGTGGAAATTAGCATTCACTGCATTCTCAGGACCGAACTATGTGTCATGTTAAAGTATGAACCCAGGGCCTGATACTGTTCAAAGACTTCTCTTCCAGAGATGAGCAGAAGAGCATCCGCAGCTCTGCTGGTCTGCTGTCAGTGCTCTCAGGACATTTTAAGAACAAGGATGTGACTTGAAAGAGTCTCCCACCCTCTGGGTTTCCAGAACTTGAAATGTATGTTTGGTTTTGTTTCATCTAACCATGTTCCCTTGAATTGTATGACTTTGAATTAAGAAGCGTATAGTTTTGAGAAATGTAACCCGTCCATGTTTTAGAAGTGGAAAAATGATCTACTTTATTGTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000041975_MULTIEX1-3/4=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.025 A=0.000 C2=0.130
Domain overlap (PFAM):
C1:
PF082417=Methyltransf_11=PU(67.7=95.7)
A:
PF082417=Methyltransf_11=PD(30.8=55.6)
C2:
PF134891=Methyltransf_23=PD(8.4=29.1)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGGATCCTGGATGTCGTTCT
R:
TCGGTCCTGAGAATGCAGTGA
Band lengths:
245-352
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types