BtaEX6009088 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000016430 | METTL8
Description
Bos taurus methyltransferase like 8 (METTL8), mRNA. [Source:RefSeq mRNA;Acc:NM_001075288]
Coordinates
chr2:25149754-25153900:+
Coord C1 exon
chr2:25149754-25149893
Coord A exon
chr2:25153593-25153699
Coord C2 exon
chr2:25153835-25153900
Length
107 bp
Sequences
Splice sites
3' ss Seq
CTCCTGCTTTGTCTTCAAAGGAT
3' ss Score
9.09
5' ss Seq
GAGGTAATG
5' ss Score
8.73
Exon sequences
Seq C1 exon
TCTCATGCATCGTACAGAGCAGCCCAGTGCTGTGCCTTTGTTCATGACGTTTGTGACCATGGCTTACCCTACCCTTTTCCGGATGGGACCCTGGATGTCATTCTCCTAGTCTTTGTTCTGTCTTCTATTCATCCTGACAG
Seq A exon
GATGCAAGGTGTTATAAACCGACTGTCCAAGTTACTGAAACCTGGGGGAATGCTGTTATTTCGGGACTATGGAAGATATGATAAGACTCAGCTTCGTTTTAAAAGAG
Seq C2 exon
GACATTGTTTATCTGAAAATTTTTATGTTCGAGGAGATGGCACCAGAGCATATTTCTTTACAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016430-'20-22,'20-21,21-22=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF134891=Methyltransf_23=FE(24.7=100)
A:
PF134891=Methyltransf_23=FE(19.4=100)
C2:
PF134891=Methyltransf_23=FE(11.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCATGCATCGTACAGAGCAGC
R:
TTTGTAAAGAAATATGCTCTGGTGCC
Band lengths:
202-309
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]