MmuEX6102072 @ mm9
Exon Skipping
Gene
ENSMUSG00000041975 | Mettl8
Description
methyltransferase like 8 [Source:MGI Symbol;Acc:MGI:2385142]
Coordinates
chr2:70804505-70811449:-
Coord C1 exon
chr2:70811310-70811449
Coord A exon
chr2:70805107-70805213
Coord C2 exon
chr2:70804505-70804570
Length
107 bp
Sequences
Splice sites
3' ss Seq
ATCTTACTTTGTTTTCAAAGGAT
3' ss Score
7.7
5' ss Seq
AAGGTAATA
5' ss Score
8.49
Exon sequences
Seq C1 exon
TCCCACGAGTCCTACAGCGAGGCCCAGTGTTCTGCCTTTATTCATGACGTGTGTGACGACGGCTTAGCCTACCCTTTCCCAGATGGGATCCTGGATGTCGTTCTCCTTGTCTTTGTGCTCTCATCTATCCACCCTGACAG
Seq A exon
GATGCAAGCTGTTGCCCACCGACTGTCCAGGTTGCTGAAGCCCGGAGGAATGCTATTGTTTCGGGATCATGGAAGATACGATAATGCTCAGCTTCGTTTTAAGAAAG
Seq C2 exon
GGCGTTGTTTATCTGAAAATTTTTATGTCCGAGGAGATGGTACCAGAGCTTATTTCTTTACAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000041975-'11-18,'11-17,15-18=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.022 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF082417=Methyltransf_11=PU(67.7=95.7)
A:
PF082417=Methyltransf_11=PD(18.7=54.1)
C2:
PF134891=Methyltransf_23=FE(11.6=100)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCCACGAGTCCTACAGCG
R:
TGTAAAGAAATAAGCTCTGGTACCA
Band lengths:
202-309
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: