BtaEX0022032 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000016430 | METTL8
Description
Bos taurus methyltransferase like 8 (METTL8), mRNA. [Source:RefSeq mRNA;Acc:NM_001075288]
Coordinates
chr2:25140619-25147928:+
Coord C1 exon
chr2:25140619-25140989
Coord A exon
chr2:25142248-25142297
Coord C2 exon
chr2:25147865-25147928
Length
50 bp
Sequences
Splice sites
3' ss Seq
TGTTTATTCTTTGATTTTAGGTT
3' ss Score
10.51
5' ss Seq
GCAGTGAGT
5' ss Score
7.39
Exon sequences
Seq C1 exon
TTAAGTATGAGAGTGAAGCCAGTAAATATTGGGACACGTTTTACAAGATTCATAAGAATAAGTTTTTCAAAGATCGTAATTGGCTATTGAGGGAATTTCCTGAAATTCTTCCAGTTGGTCAGAAAACTGAAGAGAAGGTGAAAGAATTATCATGGAATCATGTAAAAATTAATGCTGAAAGTTTTTTCTCAAAAATGCACTGCCCTACTATGCCTGAAGAAAAAAATCATTATAAAGAAAGTTCTGGCTCATCAGATGGTCAAAGCAAAGCAGGATCTGACTTTTCTAAACTGGATTCTGAAGAATACAGAGAAAGACCTCTGAAGACTGAATTGTTTCCTGGTAGCAATGCTGCTTTCAGAATCCTTGAG
Seq A exon
GTTGGCTGTGGTGCTGGGAATAGTGTTTTTCCAATTCTGAACACTTTGCA
Seq C2 exon
GAATGTGCCGGAGTTCTTTCTTTATTGTTGTGATTTTGCTTCTGGAGCTGTGGAGCTAGTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016430_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.118 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF134891=Methyltransf_23=PU(14.0=21.0)
A:
PF134891=Methyltransf_23=FE(8.6=100)
C2:
PF134891=Methyltransf_23=FE(11.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCTCATCAGATGGTCAAAGCA
R:
AGAAAGAACTCCGGCACATTC
Band lengths:
147-197
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development