DreEX6034825 @ danRer10
Exon Skipping
Gene
ENSDARG00000017359 | mettl8
Description
methyltransferase like 8 [Source:ZFIN;Acc:ZDB-GENE-041114-19]
Coordinates
chr9:3552744-3555703:+
Coord C1 exon
chr9:3552744-3552976
Coord A exon
chr9:3553091-3553140
Coord C2 exon
chr9:3555643-3555703
Length
50 bp
Sequences
Splice sites
3' ss Seq
GTGTTTTGTGTTTTCTGCAGGTG
3' ss Score
13.11
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
Exon sequences
Seq C1 exon
CCAAATATGACAGAGAAGCTCATAAATACTGGGACCAGTTTTACGAGATGCACCAGAACAAATTCTTCAGGAACCGAAATTGGCTCTTCACTGAATTCCCGGAGCTTCTCCCTCCAGACACGGGCGGGATGTTAATGGCGGAGCAGGAGCAAGGCTTAGAGTCAGTGAACAGAGAAAAGCACGATTATAAGGACACATACCCTGGACATCATGCTGCTTTTAGGATACTAGAG
Seq A exon
GTGGGCTGTGGTGCAGGTAACAGCGTGTTTCCCATCATCAACACCATCAG
Seq C2 exon
AGGCAGTAAGGCGTTTCTGTACTGCTGTGACTTCTCATCTCGAGCGATTGAGCTCATCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000017359-'6-9,'6-8,8-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.218 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF134891=Methyltransf_23=PU(32.1=96.2)
A:
PF134891=Methyltransf_23=FE(6.8=100)
C2:
PF134891=Methyltransf_23=FE(8.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACACGGGCGGGATGTTAATG
R:
CACAGCAGTACAGAAACGCCT
Band lengths:
146-196
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]