GgaEX1036002 @ galGal3
Exon Skipping
Gene
ENSGALG00000009564 | METTL8
Description
NA
Coordinates
chr7:19505287-19508513:+
Coord C1 exon
chr7:19505287-19505478
Coord A exon
chr7:19506024-19506073
Coord C2 exon
chr7:19508450-19508513
Length
50 bp
Sequences
Splice sites
3' ss Seq
TTTTTGTCTTCTGATCTTAGGTT
3' ss Score
9.78
5' ss Seq
GTGGTATGT
5' ss Score
7.64
Exon sequences
Seq C1 exon
GAGAAGGAGATGTTTGAGGAAGGAGAAAAATATTGGAAGAAAAATACTGGAGATGATTCCACTTCTGAAAAAGGATATAATAAAAAACAACCAAAATGTATTGCTGACAGGCCTTGGGGTAAAAGCAACGAGGAAGAAGTTAATGTGCTAGAATCCTTCCCTGGTAGTGATGCCACTTACAGAATATTAGAG
Seq A exon
GTTGGTTGTGGTGCTGGAAATAGTGTATTTCCTATTTTGAAAGTTCTGTG
Seq C2 exon
CAATACACCTGGAACCTTTCTGTACTGTTGTGATTTTGCTTCAGGAGCAGTGGAGCTCGTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009564-'3-5,'3-4,5-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.188 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF134891=Methyltransf_23=PU(15.3=45.3)
A:
PF134891=Methyltransf_23=FE(8.5=100)
C2:
PF134891=Methyltransf_23=FE(11.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGGCCTTGGGGTAAAAGCAA
R:
AGCTCCACTGCTCCTGAAG
Band lengths:
142-192
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]