RnoEX0048431 @ rn6
Exon Skipping
Gene
ENSRNOG00000055496 | LOC103690166
Description
zinc finger protein OZF-like [Source:RGD Symbol;Acc:9236890]
Coordinates
chr8:23302985-23304633:-
Coord C1 exon
chr8:23304492-23304633
Coord A exon
chr8:23303781-23303831
Coord C2 exon
chr8:23302985-23303081
Length
51 bp
Sequences
Splice sites
3' ss Seq
GTATGTGTTTTCTCTTCTAGACC
3' ss Score
11.52
5' ss Seq
AAGGTCAGT
5' ss Score
8.68
Exon sequences
Seq C1 exon
GATCTTGGGTAGCCCAGGTTGGCCTGAAACACGTGATAGAGCTTCCTGAATGTCAGCACTAGACCCACCACTCTGGCCTGGAGACAAGAAAGACTTCACTCTTTGACCAGACTGGGCCTGATCCCAGTCCTGCTTGGAGCAG
Seq A exon
ACCATACTTCTAGTGTCTGCTTCCTTAATGTTCACCACTGTATATCAAAAG
Seq C2 exon
GACACTGCAAGACTAAACCAGAGTTCATCTTTGAACGGGGGCTTCGATTCAGGCCATGGACCACAGCCGAAGCCTCAATTCGATGCGTGCCCAGTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000055496_MULTIEX1-4/12=3-5
Average complexity
S
Mappability confidence:
97%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTCTGGCCTGGAGACAAGAA
R:
CTGTGGTCCATGGCCTGAATC
Band lengths:
139-190
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]