RnoEX0048432 @ rn6
Exon Skipping
Gene
ENSRNOG00000055496 | LOC103690166
Description
zinc finger protein OZF-like [Source:RGD Symbol;Acc:9236890]
Coordinates
chr8:23278513-23303831:-
Coord C1 exon
chr8:23303781-23303831
Coord A exon
chr8:23302985-23303081
Coord C2 exon
chr8:23278513-23279470
Length
97 bp
Sequences
Splice sites
3' ss Seq
CTGTTATTTCCCATTTGCAGGAC
3' ss Score
11.64
5' ss Seq
TCGGTGAGT
5' ss Score
11.11
Exon sequences
Seq C1 exon
ACCATACTTCTAGTGTCTGCTTCCTTAATGTTCACCACTGTATATCAAAAG
Seq A exon
GACACTGCAAGACTAAACCAGAGTTCATCTTTGAACGGGGGCTTCGATTCAGGCCATGGACCACAGCCGAAGCCTCAATTCGATGCGTGCCCAGTCG
Seq C2 exon
GCAGAACTGAAGATTCATGAGGAAATCCATCAAGGGACAAAGTCCTATGAATGTGAAGTATGTTTGGAAGCATTTTATCTGAAGCCACAGTATAGCACTGACCAGAGATACCACACATGCGAGAATCCATACAACTGTAAAAAATTTAGAGGGGCTTTCTATTCTAAGTCGACCTTCAGACCGTGTCAGAGGCTCGAGAGAGGTGAGAAACCCCACGCATGTATAGAGTGTGGGAAATCCTTCTATTGCAAGTCTCACCTCACTGTGCATCAGAGGACCCACACAGGGGAGAAGCCCTACGAATGTAATGACTGCAAGAAGGCTTTCTACAGCAGGTCCCAGCTCAATGTGCATCTGAGAACTCATACAGGTGAGAAACCCTATGAATGTAAGGAGTGCAGGAAGACTTTCTACCGCAATTCTGACCTCACAGTGCATCAGAGGACTCACACAGGCGAGAAGCCCTACGAATGCAAAGTGTGCAGTAAAGCCTTCTACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000055496_MULTIEX1-5/12=4-11
Average complexity
C3
Mappability confidence:
97%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.009
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF134651=zf-H2C2_2=WD(100=7.8),PF134651=zf-H2C2_2=WD(100=8.1),PF134651=zf-H2C2_2=WD(100=8.1),PF134651=zf-H2C2_2=WD(100=8.1),PF134651=zf-H2C2_2=WD(100=8.1),PF134651=zf-H2C2_2=WD(100=7.8),PF134651=zf-H2C2_2=WD(100=8.1),PF134651=zf-H2C2_2=WD(100=8.1),PF134651=zf-H2C2_2=WD(100=7.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTCTGCTTCCTTAATGTTCACCA
R:
ATGGATTCTCGCATGTGTGGT
Band lengths:
168-265
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]