HsaEX0074260 @ hg38
Exon Skipping
Gene
ENSG00000227124 | ZNF717
Description
zinc finger protein 717 [Source:HGNC Symbol;Acc:HGNC:29448]
Coordinates
chr3:75716419-75741736:-
Coord C1 exon
chr3:75741610-75741736
Coord A exon
chr3:75741276-75741368
Coord C2 exon
chr3:75716419-75716541
Length
93 bp
Sequences
Splice sites
3' ss Seq
CCATTGTTTCTCATTACCAGGGC
3' ss Score
9.27
5' ss Seq
CAGGTCAGT
5' ss Score
8.94
Exon sequences
Seq C1 exon
GAGTTGGTGTCCTTTGAGGAGGTAGCTGTGCACTTCACCTGGGAGGAGTGGCAGGACCTGGATGATGCTCAGAGGACCCTGTACAGGGACGTGATGCTGGAGACCTACAGCAGCCTGGTATCATTGG
Seq A exon
GGCATTACATTACCAAACCTGAGATGATCTTCAAGCTAGAGCAAGGAGCAGAGCCATGGATAGTAGAAGAAACCCCAAACCTGAGACTTTCAG
Seq C2 exon
GCTAAGCCTCCCTCCTTTTGGTAGAGGCTTTTTTATACCATTTGGGAACTGGTTTGGATAAGCTACCTTAATGAAGGACGACACATCCCTCCAGAGATGATAAAAGACTTTTTGTCTTTTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000227124_MULTIEX1-6/9=5-9
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.004 C2=NA
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
PF0135222=KRAB=PD(0.1=0.0)
C2:
NA
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGTGGCAGGACCTGGATGAT
R:
TCTCTGGAGGGATGTGTCGTC
Band lengths:
179-272
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development