RnoEX6036848 @ rn6

Exon Skipping

Gene

ENSRNOG00000043223 | Zfp949

Description

zinc finger protein 949 [Source:RGD Symbol;Acc:2302581]

Coordinates

chr8:96376784-96380770:+

Coord C1 exon

chr8:96376784-96376910

Coord A exon

chr8:96377137-96377229

Coord C2 exon

chr8:96378778-96380770

Length

93 bp

Sequences

Splice sites

3' ss Seq

ATATTATTTCCTATTAACAGGGC

3' ss Score

9

5' ss Seq

CAGGTTAGT

5' ss Score

8.02

Exon sequences

Seq C1 exon

GAGTTGGTGTCATTTGAGGATGTCACTGTGGATTTTACCTGGGAGGAGTGGCAGAATCTCAGTGATGCTCAGAGGATACTGTACAGGAATGTGATGCTGGAGACGTATAGCAGCCTCCTGTCACTGG

Seq A exon

GGCAATGTATCCCTAAACCTGAGTTGATCTTCAAGTTGGAACAGGGAGAGGAACCATGGGCAGCAGAAGAACCTGCAAACAAGACTCTGCCAG

Seq C2 exon

TCTTCTGCAATGTGGATGGTATAATTGAAACCAACCAGAAGAGTCATGAGAGACATTTGTGGCAAGTTACTGCCAACAGCCACAATAGAGCAACTGAGGAAGCAAATGGGTTAGAAAACACTTTTTATTTATACTCCATGAATATTTCAAATTTTGTTGTAAACAATGGAAACTGTTCAAGAGTGAAGCCTGAGAAGTTGCATGGATACCTGAATACATGTCTCCCTTCTGAACCTCATGGACTGTGTACTGTAGAGCAATATAACGACTGTTGCATAGCAGGGAAATCCATCAGATGTCCTGAGCAGTTGGGGCAGCATTCCAAGGTTCAAACTGGACAGCAGGATTTTGAATATATGGGAGAAGGGAAAGATACAAAGGAGGCAAAACTCTTGAAAAGCATTGCTCCATCTAAGAGACTTCACCTGGGACTGACTTCCTGTGAGCATGGTGAATGTGAGCAAGTTTCTGTCGAGTCAGATGTCATGGATAATGGAGGG

VastDB Features

Vast-tools module Information

Secondary ID

ENSRNOG00000043223-'9-9,'9-8,10-9=AN

Average complexity

A_S

Mappability confidence:

100%=100=100%

Protein Impact

Alternative protein isoforms (Ref)

No structure available

Features

Disorder rate (Iupred):

C1=0.000 A=0.031 C2=0.078

Domain overlap (PFAM):

C1:

PF0135222=KRAB=WD(100=95.3)

A:

PF0135222=KRAB=PD(0.1=0.0)

C2:

PF134651=zf-H2C2_2=WD(100=4.9),PF134651=zf-H2C2_2=WD(100=4.9),PF134651=zf-H2C2_2=WD(100=4.9),PF134651=zf-H2C2_2=WD(100=4.9),PF134651=zf-H2C2_2=WD(100=4.9),PF134651=zf-H2C2_2=WD(100=4.9),PF134651=zf-H2C2_2=WD(100=4.9),PF134651=zf-H2C2_2=WD(100=4.9),PF134651=zf-H2C2_2=WD(100=4.6),PF134651=zf-H2C2_2=WD(100=4.9),PF134651=zf-H2C2_2=WD(100=4.9)

Main Inclusion Isoform:

ENSRNOP00000034273