MmuEX6067739 @ mm10
Exon Skipping
Gene
ENSMUSG00000032425 | Zfp949
Description
zinc finger protein 949 [Source:MGI Symbol;Acc:MGI:1918890]
Coordinates
chr9:88567159-88571061:+
Coord C1 exon
chr9:88567159-88567285
Coord A exon
chr9:88567508-88567600
Coord C2 exon
chr9:88568614-88571061
Length
93 bp
Sequences
Splice sites
3' ss Seq
ATATTATTTTCTATTAACAGGGC
3' ss Score
9.5
5' ss Seq
CAGGTTGGT
5' ss Score
8.08
Exon sequences
Seq C1 exon
GAGTTGGTGTCTTTTGAGGACGTCACTGTGAAGTTCACCTGGGAGGAGTGGCAGAATCTCAACGACGCTCAGAAGATGCTGTACAGGAGTGTGATGCTGGAGACATATAATAGCCTGCTGTCACTGG
Seq A exon
GGCAATGCATCCCTAAACCTGAGTTGATCTTTAAATTGGAACAGGGAGAGGAGCCATGGACAGCAGAAGAACCTGCAAACAAGACTCTGCCAG
Seq C2 exon
TATTCTGCAGTGTGGATGGCATAATTGAGACCAACCAGAAGAGTCGAGAGAGACATTTGTGGCAAGTTACTGCCAGTGGCCACAATAGAGAAACTGAGCAAGCACGTGGACCAGAAGACACTTTTTATTTATACTCCATGAATATTTCAAATTTTGTTGTAAATAATAGAAACTGTTCAGGAGTGAAGCCTGAGGAGTTGAATGGATACCTGAATAGATGTCACCCTTTGGAGACTCATGAATTGTGTATTGTAGAGCGATATAATGACTGTTGTGTAGCAGGGAAATCTGTCAGATGCCCTGAGCAGTTGGGTCAGTGTTCTAAGATTGAAACTGGACAGCAGGATTTCGAATATATCAGAGAAAGGAAAGATACAAAGGAGGGAAAACTATTGAAAAAAATTACTCCATCTAAGAGACTTCAAGTGGGACTGACTTCTTGTAAGCATAGTGAGTGTGAGCCACTTTCTGTTCAGTCAGATGTCATGGCTAATGTAGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000032425-'12-18,'12-16,14-18
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.094 C2=0.090
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=93.0)
A:
PF0135222=KRAB=PD(0.1=0.0)
C2:
PF134651=zf-H2C2_2=WD(100=4.9),PF134651=zf-H2C2_2=WD(100=4.9),PF134651=zf-H2C2_2=WD(100=4.9),PF134651=zf-H2C2_2=WD(100=4.9),PF134651=zf-H2C2_2=WD(100=4.9),PF134651=zf-H2C2_2=WD(100=4.9),PF134651=zf-H2C2_2=WD(100=4.9),PF134651=zf-H2C2_2=WD(100=4.6),PF134651=zf-H2C2_2=WD(100=4.9),PF134651=zf-H2C2_2=WD(100=4.9)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGGAGGAGTGGCAGAATCT
R:
CACTGGCAGTAACTTGCCACA
Band lengths:
167-260
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types