BtaEX6071810 @ bosTau6
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1MSL7]
Coordinates
chr17:45057867-45061078:+
Coord C1 exon
chr17:45057867-45058008
Coord A exon
chr17:45059275-45059370
Coord C2 exon
chr17:45060764-45061078
Length
96 bp
Sequences
Splice sites
3' ss Seq
TTGTGATTTTCCCTGAACAGGGT
3' ss Score
9.1
5' ss Seq
TAGGTGAGT
5' ss Score
8.83
Exon sequences
Seq C1 exon
ATTGTGCTCTTACAGGGGTCATTCTCATTTGAAGATTTATCTGTGGACTTCACCCAGAAGGAATGGCAGCTACTGGACCCCCATCAGAAGGACTTATACAAGGATGTCATGTTGGAGAATTATAGCAGTCTCGTGTCACTAG
Seq A exon
GGTATGAAGTTATGAAACCTGGTGTCATCCTTAAATTGGAGCAAGGAGAAGACCCATGGACAGGAGATGGAGAAATTCCAAGTTCAGGCTCAATAG
Seq C2 exon
ATCAAGTCTTTCAAGTAAATGGTCACATGACTTGGCACAAGGATAACAAGAAGTTTAAAAATATGAAACAAGATCATGAATGTGATGCACTTGGAAAAAAGTTTAATCTGAGCATGAACTTTATTCCTTTAAGGAAATCAAACAAAGAAGGTGACATAGATGGATTAATTTTAAAACATCATTTAGATTTTCTTATTCCGAAAGCAAACTATGGAAGAATGGAACCAGCTGACTTAAACATATTTGATAAATTATTTCTCCATACCAAGACTGAGGAAACTGATACTTGGTTAAAATACTATGCATGTGATAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000013001-'0-2,'0-1,1-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.152 C2=0.009
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=85.4)
A:
PF0135222=KRAB=PD(0.1=0.0)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGCTCTTACAGGGGTCATTC
R:
TTGTGCCAAGTCATGTGACCA
Band lengths:
180-276
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]