HsaEX6070314 @ hg19

Exon Skipping

Gene

ENSG00000198040 | ZNF84

Description

zinc finger protein 84 [Source:HGNC Symbol;Acc:13159]

Coordinates

chr12:133624541-133639884:+

Coord C1 exon

chr12:133624541-133624667

Coord A exon

chr12:133625339-133625434

Coord C2 exon

chr12:133633540-133639884

Length

96 bp

Sequences

Splice sites

3' ss Seq

TGTGATTTTTCCCTTAACAGGGT

3' ss Score

10.69

5' ss Seq

CAGGTGAGT

5' ss Score

10.67

Exon sequences

Seq C1 exon

GAGTCATTCTCATTTGACGATTTATCTGTGGACTTCACCCAAAAGGAGTGGCAGCTACTGGATCCCTCTCAGAAGAATTTATACAAGGATGTGATGTTGGAGAACTATAGCAGCCTAGTGTCACTGG

Seq A exon

GGTATGAAGTTATGAAACCAGATGTCATCTTCAAATTGGAGCAAGGAGAAGAGCCGTGGGTAGGAGATGGAGAAATTCCAAGTTCAGATTCTCCAG

Seq C2 exon

AAGTCTGGAAAGTAGATGGTAACATGATGTGGCACCAGGATAACCAAGACAAGCTTAAAATTATAAAAAGAGGTCATGAATGTGATGCATTTGGAAAAAATTTCAATCTGAACATGAACTTTGTTCCTTTAAGGAAATCAAACAGTGAAGGTGACTTAGATGGATTGATTTTAAAACATCATTTAGATTTGCTTATTCCAAAAGGAGATTATGGAAAAGCAGAATCAGATGACTTTAATGTGTTTGATAATTTTTTTCTCCATTCCAAGCCTGAGGATACTGATACCTGGTTAAAATACTATGACTGTGATAAATATAAAGAGAGCTATAAAAAGTCACAGATTATCATATATCATAGAAATCGTTTAGGGGAGAAACTCTATGAATGCAGTGAATGTAGGAAGCGCTTCAGTAAGAAACCAAGTCTCATTAAACATCAGAGCAGACATATAAGAGACATAGCCTTTGGCTGTGGTAATTGTGGCAAAACCTTTCCCCAG

VastDB Features

Vast-tools module Information

Secondary ID

ENSG00000198040-'6-7,'6-5,7-7=AN

Average complexity

A_S

Mappability confidence:

100%=100=100%

Protein Impact

Alternative protein isoforms (Ref)

No structure available

Features

Disorder rate (Iupred):

C1=0.000 A=0.224 C2=0.105

Domain overlap (PFAM):

C1:

PF0135222=KRAB=WD(100=95.3)

A:

PF0135222=KRAB=PD(0.1=0.0)

C2:

PF0009621=zf-C2H2=WD(100=3.5),PF134651=zf-H2C2_2=WD(100=3.8),PF134651=zf-H2C2_2=WD(100=3.9),PF134651=zf-H2C2_2=WD(100=4.1),PF134651=zf-H2C2_2=WD(100=3.9),PF134651=zf-H2C2_2=WD(100=3.8),PF134651=zf-H2C2_2=WD(100=3.9),PF134651=zf-H2C2_2=WD(100=3.9),PF134651=zf-H2C2_2=WD(100=3.9),PF134651=zf-H2C2_2=WD(100=3.9),PF134651=zf-H2C2_2=WD(100=3.6),PF134651=zf-H2C2_2=WD(100=3.9),PF134651=zf-H2C2_2=WD(100=3.9),PF134651=zf-H2C2_2=WD(100=3.8),PF134651=zf-H2C2_2=WD(100=3.9),PF134651=zf-H2C2_2=WD(100=3.9),PF134651=zf-H2C2_2=WD(100=3.8),PF134651=zf-H2C2_2=WD(100=3.9)

Main Inclusion Isoform:

ENSP00000331465