RnoEX0101294 @ rn6

Exon Skipping

Gene

ENSRNOG00000003634 | Zfp354a

Description

zinc finger protein 354A [Source:RGD Symbol;Acc:2967]

Coordinates

chr10:36589940-36599618:+

Coord C1 exon

chr10:36589940-36590066

Coord A exon

chr10:36590543-36590641

Coord C2 exon

chr10:36598147-36599618

Length

99 bp

Sequences

Splice sites

3' ss Seq

GAGTTCATTTTGTCTACAAGCAG

3' ss Score

0.59

5' ss Seq

TCGGTGAGT

5' ss Score

11.11

Exon sequences

Seq C1 exon

GTGTCAGTGACATTTGAAGATGTGGCTGTGCTCTTTACTCGGGACGAGTGGAAGAAGCTGGATCTGTCTCAGAGAAGCCTGTACCGTGAGGTGATGCTGGAGAATTACAGCAACCTGGCCTCCATGG

Seq A exon

CAGGATTCCTGTTTACCAAACCAAAGGTGATCTCCCTGTTGCAGCAAGGAGAGGATCCCTGGCAGGTGGAGAAAGAGGGCCCCAGATACTTCTCTCTCG

Seq C2 exon

GATTGAAGTGCAGTCATAGAACCACTAAGTCAACTCAAACACAAGACTCTTCATTTCAGGAACTGATTGTAAGAAAATCTAAAAGAACCTTTGCCTTCGAACCTTTGAACATGAAGTCAGAAAATCTTTTCATACATGAAGGCAAATTAGAGGAAAAGTGGGATAAGAATACTTTGACTGTAGAAAGAAGCCATAAAAACAATGAATTTAGCCCAAAGTCCCATAGAGAAAAACGGTCCTCAGAATGTAAAAAGCAGATATCTTATTTATCTAACCCACCAGGAATCACACCGGATAAACGCTATAAATGTAGCATGTGTGAGAAAACCTTCATTAACACCTCATCTCTTCGCAAACATGAGAAAAACCATAGTGGAGAGAAATTATTTAAATGTAAAGAATGTTCAAAAGCCTTCAGCCAAAGTTCAGCCCTTATTCAACATCAAATAACTCACACTGGAGAGAAGCCTTACGTATGTAAAGAATGTGGGAAGGCCTTC

VastDB Features

Vast-tools module Information

Secondary ID

ENSRNOG00000003634_CASSETTE1

Average complexity

S*

Mappability confidence:

100%=100=100%

Protein Impact

Alternative protein isoforms (Ref)

No structure available

Features

Disorder rate (Iupred):

C1=0.000 A=0.000 C2=0.130

Domain overlap (PFAM):

C1:

PF0135222=KRAB=WD(100=95.3)

A:

PF0135222=KRAB=PD(0.1=0.0)

C2:

PF134651=zf-H2C2_2=WD(100=5.3),PF134651=zf-H2C2_2=WD(100=5.1),PF079757=C1_4=WD(100=10.6),PF134651=zf-H2C2_2=WD(100=5.3),PF134651=zf-H2C2_2=WD(100=5.3),PF134651=zf-H2C2_2=WD(100=5.3),PF134651=zf-H2C2_2=WD(100=5.3),PF134651=zf-H2C2_2=WD(100=5.3),PF134651=zf-H2C2_2=WD(100=5.3),PF134651=zf-H2C2_2=WD(100=5.3),PF134651=zf-H2C2_2=WD(100=5.3),PF134651=zf-H2C2_2=WD(100=4.9)

Main Inclusion Isoform:

ENSRNOP00000049437