HsaEX6101511 @ hg19

Exon Skipping

Gene

ENSG00000169131 | ZNF354A

Description

zinc finger protein 354A [Source:HGNC Symbol;Acc:11628]

Coordinates

chr5:178138593-178154126:-

Coord C1 exon

chr5:178154000-178154126

Coord A exon

chr5:178152377-178152472

Coord C2 exon

chr5:178138593-178140622

Length

96 bp

Sequences

Splice sites

3' ss Seq

GGTTTTTTGTTTATGTGCAGGGC

3' ss Score

7.52

5' ss Seq

TAGGTAAGT

5' ss Score

9.66

Exon sequences

Seq C1 exon

GTGTCACTGACGTTTGAGGATGTGGCTGTGCTGTTTACCCGAGATGAGTGGAGAAAGCTGGCCCCTTCTCAGAGAAACTTGTACCGGGATGTGATGCTGGAGAACTATAGGAACCTGGTCTCACTGG

Seq A exon

GGCTCCCATTTACCAAACCAAAAGTGATCTCCCTGTTGCAGCAAGGAGAAGATCCCTGGGAGGTGGAGAAAGACGGTTCTGGCGTCTCCTCTCTAG

Seq C2 exon

GATCGAAGAGCAGTCATAAAACCACAAAGTCAACGCAAACACAAGACTCTTCATTTCAGGGACTGATACTGAAAAGATCCAACAGGAATGTACCTTGGGATTTGAAATTAGAAAAGCCTTACATATATGAAGGCAGATTAGAGAAAAAGCAGGATAAAAAGGGAAGTTTTCAGATAGTTTCAGCCACCCACAAAAAAATCCCCACTATAGAAAGAAGCCATAAAAATACTGAATTGAGCCAAAACTTCAGCCCAAAGTCAGTGCTTATTAGGCAACAGATACTTCCCAGAGAAAAAACACCACCAAAATGTGAAATACAAGGAAACAGCCTCAAACAGAATTCACAATTACTTAATCAACCAAAAATTACAGCAGATAAACGCTATAAATGTAGTCTGTGTGAAAAAACCTTCATTAACACTTCATCCCTTCGTAAACATGAGAAAAACCATAGTGGAGAGAAACTATTTAAGTGTAAAGAATGTTCAAAAGCCTTTAGC

VastDB Features

Vast-tools module Information

Secondary ID

ENSG00000169131-'4-6,'4-5,6-6=AN

Average complexity

A_S

Mappability confidence:

100%=100=100%

Protein Impact

Alternative protein isoforms (Ref)

No structure available

Features

Disorder rate (Iupred):

C1=0.000 A=0.364 C2=0.150

Domain overlap (PFAM):

C1:

PF0135222=KRAB=WD(100=95.3)

A:

PF0135222=KRAB=PD(0.1=0.0)

C2:

PF134651=zf-H2C2_2=WD(100=5.0),PF134651=zf-H2C2_2=WD(100=4.8),PF079757=C1_4=WD(100=10.7),PF134651=zf-H2C2_2=WD(100=5.0),PF134651=zf-H2C2_2=WD(100=5.0),PF134651=zf-H2C2_2=WD(100=5.0),PF134651=zf-H2C2_2=WD(100=5.0),PF134651=zf-H2C2_2=WD(100=5.0),PF134651=zf-H2C2_2=WD(100=5.0),PF134651=zf-H2C2_2=WD(100=5.0),PF134651=zf-H2C2_2=WD(100=5.0),PF134651=zf-H2C2_2=WD(100=4.6)

Main Inclusion Isoform:

ENSP00000337122