MmuEX6085211 @ mm10
Exon Skipping
Gene
ENSMUSG00000020364 | Zfp354a
Description
zinc finger protein 354A [Source:MGI Symbol;Acc:MGI:103172]
Coordinates
chr11:51060860-51071362:+
Coord C1 exon
chr11:51060860-51060986
Coord A exon
chr11:51061403-51061498
Coord C2 exon
chr11:51069223-51071362
Length
96 bp
Sequences
Splice sites
3' ss Seq
CTCATCTTGTCTACAAGCAGGAT
3' ss Score
6.19
5' ss Seq
TCGGTGAGT
5' ss Score
11.11
Exon sequences
Seq C1 exon
GTGTCGTTGACATTTGAAGACGTGGCCGTGCTCTTTACCCGGGATGAGTGGAAGAAGCTGGTTCCCTCTCAGAGAAGCCTGTACCGTGAGGTGATGCTGGAGAACTACAGCAACCTGGCCTCGCTGG
Seq A exon
GATTCCCGTTTACCAAACCAAAAGTGATCTCCCTGCTGCAGCAAGGAGAGGATCCCTGGAAGGTGGAGGAAGAAGGCCCTGGAGGCTTCTCTCTCG
Seq C2 exon
GACTGAAGTGCAGTCAGAGAACCACTAAGTCAACTCAAACACAAGACTCTTCATTTCGGGAACTGATTATGAGAAAATCTAAAAGAAAAGAACCTTGGAACATGAAGTCAGAAAATCTTTCCATACATGAAGGCAAATTAGAGGAAAAGTGGGATGTGAATGCCTCGACTATAGAAAGAAGCTATAAAAGCAATGAACTGAGCCCAAAGTCACATAGAGAAAAAAGGTCATCAGAATGTGAAAAGCAAATATCATATTTATCTAATCCATTAGGAATCACCCCAGATAAACGCTATAAATGTAGTATGTGTGAGAAAACTTTCATTAACACCTCATCTCTTCGTAAACATGAGAAAAATCATAGTGGAGAGAAATTATTTAAATGTAAAGAATGTTCAAAAGCCTTTAGCCAAAGTTCAGCCCTTATTCAACATCAAATAACTCATACTGGAGAGAAGCCTTATGTATGTAAAGAATGTGGCAAAGCCTTCACTCTCAGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000020364-'5-9,'5-7,7-9
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.200 C2=0.139
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
PF0135222=KRAB=PD(0.1=0.0)
C2:
PF134651=zf-H2C2_2=WD(100=5.3),PF134651=zf-H2C2_2=WD(100=5.1),PF134651=zf-H2C2_2=WD(100=5.3),PF134651=zf-H2C2_2=WD(100=5.3),PF134651=zf-H2C2_2=WD(100=5.3),PF134651=zf-H2C2_2=WD(100=5.3),PF134651=zf-H2C2_2=WD(100=5.3),PF134651=zf-H2C2_2=WD(100=5.3),PF134651=zf-H2C2_2=WD(100=5.3),PF134651=zf-H2C2_2=WD(100=5.3),PF134651=zf-H2C2_2=WD(100=4.9)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGACATTTGAAGACGTGGCCG
R:
TCCCGAAATGAAGAGTCTTGTGT
Band lengths:
181-277
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types