BtaEX0041265 @ bosTau6

Exon Skipping

Gene

ENSBTAG00000006428 | ZNF354A

Description

zinc finger protein 354A [Source:HGNC Symbol;Acc:HGNC:11628]

Coordinates

chr7:41154755-41178393:-

Coord C1 exon

chr7:41178306-41178393

Coord A exon

chr7:41172601-41172696

Coord C2 exon

chr7:41154755-41156319

Length

96 bp

Sequences

Splice sites

3' ss Seq

CTTTTTTGCTCTATGAGCAGGAC

3' ss Score

6.35

5' ss Seq

TAGGTGAGT

5' ss Score

8.83

Exon sequences

Seq C1 exon

ATCTGGCTTCTGGAGACTTCACCCATCCTCAGGGGACACTGCCCAGAAAGAAGATATGGCTACTGAACAGAGGGAAGCAAGGTCTCAG

Seq A exon

GACACCTATTTCCCAAACCCAAAGTGATCTCCCTGTTGCAGCAAGGAGAAGATCCCTGGAAGGTAGAGAAAGAAAGCCCTGGAGGCTCCTCTCTAG

Seq C2 exon

GATGGAAGAACAGTTATAAAACCACAAAGTCAACTCAAACACAAGATCGTTCATTTCAGGAACTGATAATGAAAAGATCCAAAAGGAGTGGACCCTGGGACTTCAAATCAGAAAAACCCTGCAGATATGAAGGCAGATTAGAGAAAAAGCAGGAGAAAAAAGAAAGTGTACAGATAGTTTCAGTCACTCACAGGAAAATCCTCACTATAGAGAGAAAACATAAAAATACTCAATTTGGGCAAAACTTGTGCCCAAAGTCAGTCTTTTTTAGGCAGCAGGTGATCCCAAGAGAGAAAGCCCCACCAAAATGTGAAATACAAGGAAACAGCTTCAAACAAAATTTCAGTTTATTTAATCAACAAAAAACCAACACAGCTGGGAAACGTTATAAATGTAGTATGTGTGAGAAAACTTTCATAAATACTTCATCGCTTCGTAAACATGAGAAAAACCACAGTGGAGAGAAATTATTTAAATGTAAAGACTGTTCAAAAGCCTTT

VastDB Features

Vast-tools module Information

Secondary ID

ENSBTAG00000006428_MULTIEX1-4/4=C1-C2

Average complexity

C2*

Mappability confidence:

100%=100=100%

Protein Impact

Alternative protein isoforms (Ref)

No structure available

Features

Disorder rate (Iupred):

C1=0.455 A=0.273 C2=0.087

Domain overlap (PFAM):

C1:

NO

A:

PF0135222=KRAB=PD(0.1=0.0)

C2:

PF134651=zf-H2C2_2=WD(100=5.0),PF134651=zf-H2C2_2=WD(100=4.8),PF079757=C1_4=WD(100=8.0),PF134651=zf-H2C2_2=WD(100=5.0),PF134651=zf-H2C2_2=WD(100=5.0),PF134651=zf-H2C2_2=WD(100=5.0),PF134651=zf-H2C2_2=WD(100=5.0),PF134651=zf-H2C2_2=WD(100=5.0),PF134651=zf-H2C2_2=WD(100=5.0),PF134651=zf-H2C2_2=WD(100=5.0),PF134651=zf-H2C2_2=WD(100=5.0),PF134651=zf-H2C2_2=WD(100=4.6)

Main Inclusion Isoform:

ENSBTAP00000008427