BtaALTA0033975-2/3 @ bosTau6
Alternative 3'ss
Gene
ENSBTAG00000006428 | ZNF354A
Description
zinc finger protein 354A [Source:HGNC Symbol;Acc:HGNC:11628]
Coordinates
chr7:41172601-41173763:-
Coord C1 exon
chr7:41173637-41173763
Coord A exon
chr7:41172656-41172696
Coord C2 exon
chr7:41172601-41172655
Length
41 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAGG
5' ss Score
9.08
3' ss Seq
CTTTTTTGCTCTATGAGCAGGAC
3' ss Score
6.35
Exon sequences
Seq C1 exon
GTGTCAGTGACGTTCGAAGATGTGGCTGTGCTCTTTACACGGGATGAGTGGAGAAAGCTGGCTCCTCCTCAGAGAAACTTGTACCAAGATGTGATGCTGGAGAACTATAATAATCTTGTCTCCTTGG
Seq A exon
GACACCTATTTCCCAAACCCAAAGTGATCTCCCTGTTGCAG
Seq C2 exon
CAAGGAGAAGATCCCTGGAAGGTAGAGAAAGAAAGCCCTGGAGGCTCCTCTCTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006428-5-9,5-8,5-7-2/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.273
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3),PF086325=Zds_C=WD(100=62.8)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGAAGATGTGGCTGTGCTCTT
R:
ACCTTCCAGGGATCTTCTCCT
Band lengths:
136-177
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development