BtaEX0041264 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000006428 | ZNF354A
Description
zinc finger protein 354A [Source:HGNC Symbol;Acc:HGNC:11628]
Coordinates
chr7:41172601-41173763:-
Coord C1 exon
chr7:41173637-41173763
Coord A exon
chr7:41173225-41173258
Coord C2 exon
chr7:41172601-41172696
Length
34 bp
Sequences
Splice sites
3' ss Seq
TTCTCAATTCTCTTTTACAGGGG
3' ss Score
10.58
5' ss Seq
GGAGTAAGT
5' ss Score
8.57
Exon sequences
Seq C1 exon
GTGTCAGTGACGTTCGAAGATGTGGCTGTGCTCTTTACACGGGATGAGTGGAGAAAGCTGGCTCCTCCTCAGAGAAACTTGTACCAAGATGTGATGCTGGAGAACTATAATAATCTTGTCTCCTTGG
Seq A exon
GGGTCAGCAAACTTTTTCTTTAAAGGGCCAGGGA
Seq C2 exon
GACACCTATTTCCCAAACCCAAAGTGATCTCCCTGTTGCAGCAAGGAGAAGATCCCTGGAAGGTAGAGAAAGAAAGCCCTGGAGGCTCCTCTCTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006428_MULTIEX1-3/4=1-4
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.273
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3),PF086325=Zds_C=WD(100=62.8)
A:
PF0135222=KRAB=PD(0.1=0.0)
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Inclusion Isoform:
ENSBTAT00000008427fB7996
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGATGAGTGGAGAAAGCTGGC
R:
GCTGCAACAGGGAGATCACTT
Band lengths:
128-162
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development