MmuEX6085211 @ mm9

Exon Skipping

Gene

ENSMUSG00000020364 | Zfp354a

Description

zinc finger protein 354A [Source:MGI Symbol;Acc:MGI:103172]

Coordinates

chr11:50874362-50884864:+

Coord C1 exon

chr11:50874362-50874488

Coord A exon

chr11:50874905-50875000

Coord C2 exon

chr11:50882725-50884864

Length

96 bp

Sequences

Splice sites

3' ss Seq

CTCATCTTGTCTACAAGCAGGAT

3' ss Score

6.19

5' ss Seq

TCGGTGAGT

5' ss Score

11.11

Exon sequences

Seq C1 exon

GTGTCGTTGACATTTGAAGACGTGGCCGTGCTCTTTACCCGGGATGAGTGGAAGAAGCTGGTTCCCTCTCAGAGAAGCCTGTACCGTGAGGTGATGCTGGAGAACTACAGCAACCTGGCCTCGCTGG

Seq A exon

GATTCCCGTTTACCAAACCAAAAGTGATCTCCCTGCTGCAGCAAGGAGAGGATCCCTGGAAGGTGGAGGAAGAAGGCCCTGGAGGCTTCTCTCTCG

Seq C2 exon

GACTGAAGTGCAGTCAGAGAACCACTAAGTCAACTCAAACACAAGACTCTTCATTTCGGGAACTGATTATGAGAAAATCTAAAAGAAAAGAACCTTGGAACATGAAGTCAGAAAATCTTTCCATACATGAAGGCAAATTAGAGGAAAAGTGGGATGTGAATGCCTCGACTATAGAAAGAAGCTATAAAAGCAATGAACTGAGCCCAAAGTCACATAGAGAAAAAAGGTCATCAGAATGTGAAAAGCAAATATCATATTTATCTAATCCATTAGGAATCACCCCAGATAAACGCTATAAATGTAGTATGTGTGAGAAAACTTTCATTAACACCTCATCTCTTCGTAAACATGAGAAAAATCATAGTGGAGAGAAATTATTTAAATGTAAAGAATGTTCAAAAGCCTTTAGCCAAAGTTCAGCCCTTATTCAACATCAAATAACTCATACTGGAGAGAAGCCTTATGTATGTAAAGAATGTGGCAAAGCCTTCACTCTCAGT

VastDB Features

Vast-tools module Information

Secondary ID

ENSMUSG00000020364-'4-8,'4-7,5-8=AN

Average complexity

A_S

Mappability confidence:

100%=100=100%

Protein Impact

Alternative protein isoforms (Ref)

No structure available

Features

Disorder rate (Iupred):

C1=0.000 A=0.184 C2=0.139

Domain overlap (PFAM):

C1:

PF0135222=KRAB=WD(100=95.3)

A:

PF0135222=KRAB=PD(0.1=0.0)

C2:

PF134651=zf-H2C2_2=WD(100=5.3),PF134651=zf-H2C2_2=WD(100=5.1),PF134651=zf-H2C2_2=WD(100=5.3),PF079757=C1_4=WD(100=8.6),PF134651=zf-H2C2_2=WD(100=5.3),PF134651=zf-H2C2_2=WD(100=5.3),PF134651=zf-H2C2_2=WD(100=5.3),PF134651=zf-H2C2_2=WD(100=5.3),PF134651=zf-H2C2_2=WD(100=5.3),PF134651=zf-H2C2_2=WD(100=5.3),PF134651=zf-H2C2_2=WD(100=5.3),PF134651=zf-H2C2_2=WD(100=4.9)

Main Inclusion Isoform:

ENSMUSP00000020628