RnoALTA0045657-2/3 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000003634 | Zfp354a
Description
zinc finger protein 354A [Source:RGD Symbol;Acc:2967]
Coordinates
chr10:36589940-36590641:+
Coord C1 exon
chr10:36589940-36590066
Coord A exon
chr10:36590546-36590586
Coord C2 exon
chr10:36590587-36590641
Length
41 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAGT
5' ss Score
10.24
3' ss Seq
TTCATTTTGTCTACAAGCAGGAT
3' ss Score
6.13
Exon sequences
Seq C1 exon
GTGTCAGTGACATTTGAAGATGTGGCTGTGCTCTTTACTCGGGACGAGTGGAAGAAGCTGGATCTGTCTCAGAGAAGCCTGTACCGTGAGGTGATGCTGGAGAATTACAGCAACCTGGCCTCCATGG
Seq A exon
GATTCCTGTTTACCAAACCAAAGGTGATCTCCCTGTTGCAG
Seq C2 exon
CAAGGAGAGGATCCCTGGCAGGTGGAGAAAGAGGGCCCCAGATACTTCTCTCTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000003634-8-7,8-6,8-5-2/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGTGCTCTTTACTCGGGAC
R:
TATCTGGGGCCCTCTTTCTCC
Band lengths:
147-188
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]