BtaEX6035523 @ bosTau6

Exon Skipping

Gene

ENSBTAG00000005017 | ZNF169

Description

zinc finger protein 169 [Source:HGNC Symbol;Acc:HGNC:12957]

Coordinates

chr8:86955749-86974921:+

Coord C1 exon

chr8:86955749-86955875

Coord A exon

chr8:86956457-86956552

Coord C2 exon

chr8:86973390-86974921

Length

96 bp

Sequences

Splice sites

3' ss Seq

TTTTTTTCCCCTGTGGGTAGGAA

3' ss Score

8.31

5' ss Seq

CAGGTAAGT

5' ss Score

10.86

Exon sequences

Seq C1 exon

GCATTAATGGCCTTCAGGGATGTGGCTGTGGCCTTCACCCAGAAGGAATGGAAGCTACTGAGTCCTGCTCAGAGGACCCTGTATCGGGATGTAATGCTGGAGAACTACAGCCATATGGTGTCGCTGG

Seq A exon

GAATTGCCTTTCCTAAACCAAAACTCATTATACAACTGGAACAAGGAGACGAGCCCTGGAGAGAGGAGAGTGAATGTCTTCTGGACCTTTGTGCAG

Seq C2 exon

CAGAAGGAAGAAAAGAATTCCAACCCTGTCTCTCCTGCCCGGTGACTTTTTCCAGTCCACAGATCCTCCATCACTATATGCTCTGTGGTCATGCCCTTCAGATCTTCCCAGGTTCATCTGCAGAAAGCCACTTCCTACTAGATGCTCCAAGCTGCTTGAATGAAAAAGCAAAAGATGGAGAGAGAGAAGGCTCTGGCACTGTGTTTGGGAGGCTGCAGCTGAGTGGGACTTCAAGGGCATTTTTCAGCTCATCTCAAGGTCAGCCAGTAGACCAGGGAGGCAGTAGCAGTGGAAGAATAGACCAGGGGATGATCTCTGACGAGGCAGATGCAGTATTAACAGAGACAAACATCTCAGAATCTGGAGCAGTCATATGTGAAAACTATAGACTAGGATTTAGCAGAAAATCAAGCCTCTTTAGCCTCCAGAAGCATCATGTGTGCCCTGAATGTGGCAGAAACTTCTGCCAGAAGTCAGACCTCGTCAAACACCAGAGGACT

VastDB Features

Vast-tools module Information

Secondary ID

ENSBTAG00000005017-'0-5,'0-0,1-5=AN

Average complexity

A_C2

Mappability confidence:

100%=100=100%

Protein Impact

Alternative protein isoforms (Ref)

No structure available

Features

Disorder rate (Iupred):

C1=0.000 A=0.030 C2=0.114

Domain overlap (PFAM):

C1:

PF0135222=KRAB=WD(100=95.3)

A:

PF0135222=KRAB=PD(0.1=0.0)

C2:

PF134651=zf-H2C2_2=WD(100=5.1),PF134651=zf-H2C2_2=WD(100=5.1),PF134651=zf-H2C2_2=WD(100=5.1),PF134651=zf-H2C2_2=WD(100=4.7),PF0009621=zf-C2H2=WD(100=4.5),PF134651=zf-H2C2_2=WD(100=5.1),PF134651=zf-H2C2_2=WD(100=5.1),PF134651=zf-H2C2_2=WD(100=4.9),PF134651=zf-H2C2_2=WD(100=4.9),PF134651=zf-H2C2_2=WD(100=5.1)

Main Inclusion Isoform:

ENSBTAP00000006604