RnoEX0101070 @ rn6
Exon Skipping
Gene
ENSRNOG00000017092 | Zfp169
Description
zinc finger protein 169 [Source:RGD Symbol;Acc:1304631]
Coordinates
chr17:16455026-16470842:+
Coord C1 exon
chr17:16455026-16455484
Coord A exon
chr17:16460450-16460539
Coord C2 exon
chr17:16468708-16470842
Length
90 bp
Sequences
Splice sites
3' ss Seq
GGTTTGTTTCTCGTGACTAGGAA
3' ss Score
7.74
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
Exon sequences
Seq C1 exon
GTTGTACATATCTAATCCCAGCCACCCACAACACTGTGGTAAGAGTTGGGAGTTGAGCTAACATGGACAGTATAGCAAGAACCACTTCGGGTAAAGTAAAATGGAGAATGAAGTAGGAGGATTTAGTCTTCCTGAGTTCAAACCCTGCTATATAGCCACACTAGTTAAAACTGTGGCTTTTGAAGGTCTTGTATATGCCTAGAGCAAAACAGGACACCCAGCGTTTCCGAGTTCTATGTGTGGAACTGGCGTTTGTATATGGAAATTGTCTTCAACACACAGCAGTAAGGTTCAGGGCGGCTTTCATGAGCAGGGATGTGTTCTTGTTACAGGCATTAATGGCTTTTCATGACGTGGCCGTGGCCTTCAGCCAGACGGAGTGGAAGCTGTTGAGTCCTGCTCAGAGGATCCTATACAGGGAAGTGATGCTGGAGAACTATAGCCATCTGGTCTCCCTGG
Seq A exon
GAATTGCTTTTCCCAAACCGAAACTCATCACACAGCTGGAACAAGGAACAGAGCCCTGGAGAGATGGATGTCTTCTGGACCTCTGTTCAG
Seq C2 exon
AACCCAGGACAGAATTAGAGGCCGGTCTCTCCTGCCCGATATCCTTTGCTAGTCCAGAAGTCCTCAGAGTGTGTGTGCTGAATGGATCTCCCTCTCAGACTTTCCCAAGCCCACCAGAAGGAGGCAACTTCCAGTCAGAAGCTCCAGGCTGTTCTAGCAATGGAGGAGGTGAAGAGAGAGACAACAGTGATGCTCTGTTGCAGAGGACGAGTCCAACAAGGATTCTGAAGACGTTCTTTAGCCCATGTCAAGGTCAGATGGCATACTGGGCAGAAGGCGACAGTAAGCAAACAGACCTTGGCCTGGCCCCTGAGGAGGCAGTCCCGGTGTTGAAGGGACCCGATGAGTCAGCATCTGGAGCCGTCATACAAGGAGCGTTTCCACTAGGGCTTAATGATGTCACAAACCTGTTCAGCCCTCAGAAGCATCACGTATATCCTGACTGTGGAGGGGGCTTTTGCCAGAGTTCGGACCTCATGAAGCTCCAGAGAATGGACGGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000017092-'0-5,'0-1,1-5
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.113
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=46.1)
A:
PF0135222=KRAB=PD(0.1=0.0)
C2:
PF134651=zf-H2C2_2=WD(100=3.7),PF134651=zf-H2C2_2=WD(100=4.2),PF134651=zf-H2C2_2=WD(100=3.7),PF134651=zf-H2C2_2=WD(100=3.9),PF134651=zf-H2C2_2=WD(100=4.0),PF134651=zf-H2C2_2=WD(100=4.0),PF134651=zf-H2C2_2=WD(100=3.9),PF134651=zf-H2C2_2=WD(100=4.0),PF134651=zf-H2C2_2=WD(100=4.0),PF134651=zf-H2C2_2=WD(100=4.0),PF097235=Zn-ribbon_8=WD(100=6.8),PF134651=zf-H2C2_2=WD(100=4.0),PF134651=zf-H2C2_2=WD(100=4.0),PF134651=zf-H2C2_2=WD(100=4.0),PF134651=zf-H2C2_2=WD(100=3.9),PF134651=zf-H2C2_2=WD(100=3.9),PF134651=zf-H2C2_2=WD(100=3.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGGGAAGTGATGCTGGAGA
R:
GAAGTTGCCTCCTTCTGGTGG
Band lengths:
176-266
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]