MmuEX6058244 @ mm10
Exon Skipping
Gene
ENSMUSG00000050954 | Zfp169
Description
zinc finger protein 169 [Source:MGI Symbol;Acc:MGI:1915161]
Coordinates
chr13:48491356-48498906:-
Coord C1 exon
chr13:48498780-48498906
Coord A exon
chr13:48498323-48498418
Coord C2 exon
chr13:48491356-48491393
Length
96 bp
Sequences
Splice sites
3' ss Seq
GGTTTGTTTCTTGTGACTAGGAA
3' ss Score
7.07
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
Exon sequences
Seq C1 exon
GCATTAATGGCCTTCCATGACGTGGCTGTGGCCTTCAGCCAGATGGAGTGGGAGCTGCTGAGTCCTGCCCAGAGGATCCTGTACAGGGATGTAATGCTGGAGAACTATAGCCACCTTGTCTCCCTGG
Seq A exon
GAATTGCCTTTTCCAAACCAAAACTCATCACGCAGCTGGAACAAGGGGCAGAACCCTGGAGAGATGGCAGCGGATGCTTTCTGGACCTTTGTCCAG
Seq C2 exon
AACCCAGGACAGAATTAGAGCCCTCTCTTTCGTCCCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000050954-'9-6,'9-4,10-6
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.030 C2=0.148
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
PF0135222=KRAB=PD(0.1=0.0)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCATGACGTGGCTGTGGC
R:
GGGGACGAAAGAGAGGGCTC
Band lengths:
150-246
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types