HsaEX6070314 @ hg38
Exon Skipping
Gene
ENSG00000198040 | ZNF84
Description
zinc finger protein 84 [Source:HGNC Symbol;Acc:HGNC:13159]
Coordinates
chr12:133047955-133063297:+
Coord C1 exon
chr12:133047955-133048081
Coord A exon
chr12:133048753-133048848
Coord C2 exon
chr12:133056954-133063297
Length
96 bp
Sequences
Splice sites
3' ss Seq
TGTGATTTTTCCCTTAACAGGGT
3' ss Score
10.69
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
GAGTCATTCTCATTTGACGATTTATCTGTGGACTTCACCCAAAAGGAGTGGCAGCTACTGGATCCCTCTCAGAAGAATTTATACAAGGATGTGATGTTGGAGAACTATAGCAGCCTAGTGTCACTGG
Seq A exon
GGTATGAAGTTATGAAACCAGATGTCATCTTCAAATTGGAGCAAGGAGAAGAGCCGTGGGTAGGAGATGGAGAAATTCCAAGTTCAGATTCTCCAG
Seq C2 exon
AAGTCTGGAAAGTAGATGGTAACATGATGTGGCACCAGGATAACCAAGACAAGCTTAAAATTATAAAAAGAGGTCATGAATGTGATGCATTTGGAAAAAATTTCAATCTGAACATGAACTTTGTTCCTTTAAGGAAATCAAACAGTGAAGGTGACTTAGATGGATTGATTTTAAAACATCATTTAGATTTGCTTATTCCAAAAGGAGATTATGGAAAAGCAGAATCAGATGACTTTAATGTGTTTGATAATTTTTTTCTCCATTCCAAGCCTGAGGATACTGATACCTGGTTAAAATACTATGACTGTGATAAATATAAAGAGAGCTATAAAAAGTCACAGATTATCATATATCATAGAAATCGTTTAGGGGAGAAACTCTATGAATGCAGTGAATGTAGGAAGCGCTTCAGTAAGAAACCAAGTCTCATTAAACATCAGAGCAGACATATAAGAGACATAGCCTTTGGCTGTGGTAATTGTGGCAAAACCTTTCCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000198040_MULTIEX1-4/9=3-7
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.229 C2=0.097
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
PF0135222=KRAB=PD(0.1=0.0)
C2:
PF0009621=zf-C2H2=WD(100=3.5),PF134651=zf-H2C2_2=WD(100=3.8),PF134651=zf-H2C2_2=WD(100=3.9),PF134651=zf-H2C2_2=WD(100=4.1),PF134651=zf-H2C2_2=WD(100=3.9),PF134651=zf-H2C2_2=WD(100=3.8),PF134651=zf-H2C2_2=WD(100=3.9),PF134651=zf-H2C2_2=WD(100=3.9),PF134651=zf-H2C2_2=WD(100=3.9),PF134651=zf-H2C2_2=WD(100=3.9),PF134651=zf-H2C2_2=WD(100=3.6),PF134651=zf-H2C2_2=WD(100=3.9),PF134651=zf-H2C2_2=WD(100=3.9),PF134651=zf-H2C2_2=WD(100=3.8),PF134651=zf-H2C2_2=WD(100=3.9),PF134651=zf-H2C2_2=WD(100=3.9),PF134651=zf-H2C2_2=WD(100=3.8),PF134651=zf-H2C2_2=WD(100=3.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGGAGTGGCAGCTACTGGAT
R:
TGCATCACATTCATGACCTCT
Band lengths:
174-270
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains