RnoEX0101922 @ rn6

Exon Skipping

Gene

ENSRNOG00000015071 | Zim1

Description

zinc finger, imprinted 1 [Source:RGD Symbol;Acc:1310930]

Coordinates

chr1:70259419-70265524:+

Coord C1 exon

chr1:70259419-70259545

Coord A exon

chr1:70260099-70260194

Coord C2 exon

chr1:70264191-70265524

Length

96 bp

Sequences

Splice sites

3' ss Seq

CTTCTTTTTCTGTGGGACAGAAT

3' ss Score

6.4

5' ss Seq

AAGGTGAGG

5' ss Score

9.16

Exon sequences

Seq C1 exon

GAACCAGTGATCTTCAAAGATGTAGCTGTGTACTTCAGCCAGAAAGAGTGGCAGCTACTGGAGCCTGCTCAGAAGGACCTGTACAAGGATGTGATGCTGGAGAACTACGGGAACCTGATCTCTGTGG

Seq A exon

AATATTATATTTTTAAGCCAAAGTTGATCACCAGATTGGAGCAAGGAATTGACCTTTTTGCCAAAGAGAATGATACTCCTGGAGACCCCCAGCAAG

Seq C2 exon

GGAAGAAGACGGGGAATAATTCCACAAAGGCAGAAACCCGGAAGCCAGATAACTCTAAGAACGTGTCACAGGAGAAGCTGAAGAAGGCAGATCAAGGGGGTGGTTCCCAGAATTTGAGAGCAGAAAAGACCTCAAAAAGTGATGACAGGCCATCTCAAAATAAGGAGAAGAGTGACTCAACTTCGACTACAGAAGCAGGCAAAACCACCAATCCTGGCAATCAGGAGAATGAATCTGCAGCCCCGGGGACATCTTCGAGTCAAACACCATCAACTACAGCACCACAGAGCACTCCTCCAGAAAAGTCGACATCAGGGAAAGATGGTCAAGGAAAATCACCTAACACCAGCAGTTCCACAAACCCAAAGCGCAAGCCTGCCCGACAAGGTAAAAACCACTTTAAATGCAAGGAATGTGGGAAAACCTTCAACCAGACCCTCCACCTCGTGGAGCATGAGCGAATCCACACGGGAGAGAAACCCCACAAGTGCGACACGTGC

VastDB Features

Vast-tools module Information

Secondary ID

ENSRNOG00000015071-'6-11,'6-10,7-11

Average complexity

S

Mappability confidence:

100%=100=100%

Protein Impact

Alternative protein isoforms (No Ref)

No structure available

Features

Disorder rate (Iupred):

C1=0.000 A=0.667 C2=0.374

Domain overlap (PFAM):

C1:

PF0135222=KRAB=WD(100=95.3)

A:

PF0135222=KRAB=PD(0.1=0.0)

C2:

PF134651=zf-H2C2_2=WD(100=5.8),PF134651=zf-H2C2_2=WD(100=5.8),PF134651=zf-H2C2_2=WD(100=5.8),PF134651=zf-H2C2_2=WD(100=5.8),PF134651=zf-H2C2_2=WD(100=5.6),PF134651=zf-H2C2_2=WD(100=5.8),PF079757=C1_4=WD(100=10.6),PF134651=zf-H2C2_2=WD(100=5.8),PF134651=zf-H2C2_2=WD(100=5.8),PF134651=zf-H2C2_2=WD(100=5.8)

Main Inclusion Isoform:

ENSRNOP00000075231