HsaEX0073780 @ hg38
Exon Skipping
Gene
ENSG00000198298 | ZNF485
Description
zinc finger protein 485 [Source:HGNC Symbol;Acc:HGNC:23440]
Coordinates
chr10:43606997-43617903:+
Coord C1 exon
chr10:43606997-43607074
Coord A exon
chr10:43609255-43609350
Coord C2 exon
chr10:43616291-43617903
Length
96 bp
Sequences
Splice sites
3' ss Seq
TCCTTTTTCTTTATGAACAGGGC
3' ss Score
9.51
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
ATTGACTTACGCAGGATTCTCAGCCCTTGCCTGGGAGAACAGTTCAGGAGACAGATGGCCCCAAGAGCCCAGATCCAG
Seq A exon
GGCTTCTCTCTTCCAAACCAAAACTAATTACTCAGTTGGAGCAAGGGGCAGAGCCCTGGACTGAGGTGCGAGAGGCTCCATCAGGCACACATGCAG
Seq C2 exon
TCGAGGATTACTGGTTTGAAACAAAGATGTCAGCCCTAAAGCAAAGCACTTCTGAAGCATCTGTTCTGGGAGAGCGAACGAAAAGTGTCATGATGGAAAAAGGCCTGGACTGGGAGGGCAGAAGCTCCACAGAGAAGAACTATAAGTGCAAGGAATGTGGGAAAGTCTTCAAATACAATTCGTCCTTTATTAGCCACCAGAGAAATCACACCAGTGAGAAACCACATAAATGTAAAGAATGTGGGATCGCCTTTATGAACAGTTCATCCCTTTTAAATCACCATAAGGTTCATGCAGGCAAACAGCCTTATAGATGTATTGAATGTGGGAAGTTCCTGAAGAAGCACTCAACGTTTATCAACCATCAGAGAATTCATTCTAGGGAGAAACCCCACAAATGCATTGAATGTGGAAAAACTTTCAGAAAGAACTCAATCCTTTTAAGTCATCAGAGAATTCATACTGGCCAGAAACCCTACAAATGTAATGACTGTGGGAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000198298_MULTIEX1-2/2=C1-C2
Average complexity
C2*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.273 C2=0.138
Domain overlap (PFAM):
C1:
NO
A:
PF0135222=KRAB=PD(0.1=0.0)
C2:
PF0009621=zf-C2H2=WD(100=6.4),PF134651=zf-H2C2_2=WD(100=7.2),PF134651=zf-H2C2_2=WD(100=6.9),PF134651=zf-H2C2_2=WD(100=6.9),PF134651=zf-H2C2_2=WD(100=6.9),PF134651=zf-H2C2_2=WD(100=6.9),PF134651=zf-H2C2_2=WD(100=6.9),PF134651=zf-H2C2_2=WD(100=6.9),PF134651=zf-H2C2_2=WD(100=7.2),PF134651=zf-H2C2_2=WD(100=7.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTTGCCTGGGAGAACAGTTC
R:
CTCCCAGTCCAGGCCTTTTTC
Band lengths:
170-266
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development