MmuEX6008346 @ mm10
Exon Skipping
Gene
ENSMUSG00000002266 | Zim1
Description
zinc finger, imprinted 1 [Source:MGI Symbol;Acc:MGI:1341879]
Coordinates
chr7:6671269-6682866:-
Coord C1 exon
chr7:6682740-6682866
Coord A exon
chr7:6682050-6682181
Coord C2 exon
chr7:6671269-6678262
Length
132 bp
Sequences
Splice sites
3' ss Seq
CTTGTTTTTCTGTGGGACAGAAT
3' ss Score
5.97
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
GAACCAGTGATCTTCAAAGATGTAGCTGTGTACTTCAGCCAGAAAGAGTGGCAGCTACTGGAGCCTGCTCAGAAGGACCTGTACAAGGATGTGATGCTGGAGAACTACGAGAACCTGATCTCTGTGG
Seq A exon
AATATTATATTTTCAAGCCAAAGTTGATCACCAGGTTGGAGCAAGGAGTTGACCTTTTTGCCAAAGAGAACGATGTTCCTGGAGACCCCCAGCAAGGTGAGGCAGGAGTCAGCAGAAGTGACACCTCTGCAG
Seq C2 exon
GGAAGAAGACAGGGGATAATTCCACAAAGGCAGAAATCCGGAAGCCAGACAATTCTAAGACAACATCACTGGAGAAGCAGAAGGCGGCAGATCAAGGCCGTGGTTCCCAGAGTTTGAGAGCAGAAAAGACCTCAAAAAGTGATGACAGGCCATCTCAAAATAAGGAGAAATGTGCCTCAACTTCGACTACAGAAGCAAGCAAAACCAGCATACCGGGCAATAAGGAGAATGAATCTGCAATTCCAGGCACATCTTCGGGTCAAACATCAGCAGCAACTACAACACCACAGAGCGCTCCTTCGGAAAAGCCGACCTCGGGGAAAGATGTTGAGGGAAAACCACAGACCATGAGGAGCAGTTCCACAAATCCAAAGCGCAAGCCTGCCCGACAAGGTAAAAACCACTTTAAATGCAAGGAATGCGGGAAAACCTTCAACCAGACCCTCCACCTCGTGGAACATGAGCGAATTCACACAGGAGAGAAACCCCACAAGTGTGAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000002266-'9-14,'9-12,10-14=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.567 C2=0.343
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
PF0135222=KRAB=PD(0.1=0.0)
C2:
PF134651=zf-H2C2_2=WD(100=5.8),PF134651=zf-H2C2_2=WD(100=5.8),PF134651=zf-H2C2_2=WD(100=5.8),PF134651=zf-H2C2_2=WD(100=5.8),PF134651=zf-H2C2_2=WD(100=5.6),PF134651=zf-H2C2_2=WD(100=5.8),PF079757=C1_4=WD(100=10.7),PF134651=zf-H2C2_2=WD(100=5.8),PF134651=zf-H2C2_2=WD(100=5.8),PF134651=zf-H2C2_2=WD(100=5.8)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTGGAGAACTACGAGAACCT
R:
CGGTATGCTGGTTTTGCTTGC
Band lengths:
248-380
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types