MmuEX6008346 @ mm9

Exon Skipping

Gene

ENSMUSG00000002266 | Zim1

Description

zinc finger, imprinted 1 [Source:MGI Symbol;Acc:MGI:1341879]

Coordinates

chr7:6628154-6635577:-

Coord C1 exon

chr7:6635451-6635577

Coord A exon

chr7:6634761-6634892

Coord C2 exon

chr7:6628154-6630973

Length

132 bp

Sequences

Splice sites

3' ss Seq

CTTGTTTTTCTGTGGGACAGAAT

3' ss Score

5.97

5' ss Seq

CAGGTGAGT

5' ss Score

10.67

Exon sequences

Seq C1 exon

GAACCAGTGATCTTCAAAGATGTAGCTGTGTACTTCAGCCAGAAAGAGTGGCAGCTACTGGAGCCTGCTCAGAAGGACCTGTACAAGGATGTGATGCTGGAGAACTACGAGAACCTGATCTCTGTGG

Seq A exon

AATATTATATTTTCAAGCCAAAGTTGATCACCAGGTTGGAGCAAGGAGTTGACCTTTTTGCCAAAGAGAACGATGTTCCTGGAGACCCCCAGCAAGGTGAGGCAGGAGTCAGCAGAAGTGACACCTCTGCAG

Seq C2 exon

GGAAGAAGACAGGGGATAATTCCACAAAGGCAGAAATCCGGAAGCCAGACAATTCTAAGACAACATCACTGGAGAAGCAGAAGGCGGCAGATCAAGGCCGTGGTTCCCAGAGTTTGAGAGCAGAAAAGACCTCAAAAAGTGATGACAGGCCATCTCAAAATAAGGAGAAATGTGCCTCAACTTCGACTACAGAAGCAAGCAAAACCAGCATACCGGGCAATAAGGAGAATGAATCTGCAATTCCAGGCACATCTTCGGGTCAAACATCAGCAGCAACTACAACACCACAGAGCGCTCCTTCGGAAAAGCCGACCTCGGGGAAAGATGTTGAGGGAAAACCACAGACCATGAGGAGCAGTTCCACAAATCCAAAGCGCAAGCCTGCCCGACAAGGTAAAAACCACTTTAAATGCAAGGAATGCGGGAAAACCTTCAACCAGACCCTCCACCTCGTGGAACATGAGCGAATTCACACAGGAGAGAAACCCCACAAGTGTGAC

VastDB Features

Vast-tools module Information

Secondary ID

ENSMUSG00000002266-'7-11,'7-8,8-11=AN

Average complexity

A_S

Mappability confidence:

100%=100=100%

Protein Impact

Alternative protein isoforms (Ref)

No structure available

Features

Disorder rate (Iupred):

C1=0.000 A=0.622 C2=0.343

Domain overlap (PFAM):

C1:

PF0135222=KRAB=WD(100=95.3)

A:

PF0135222=KRAB=PD(0.1=0.0)

C2:

PF134651=zf-H2C2_2=WD(100=5.8),PF134651=zf-H2C2_2=WD(100=5.8),PF134651=zf-H2C2_2=WD(100=5.8),PF134651=zf-H2C2_2=WD(100=5.8),PF134651=zf-H2C2_2=WD(100=5.6),PF134651=zf-H2C2_2=WD(100=5.8),PF079757=C1_4=WD(100=10.7),PF134651=zf-H2C2_2=WD(100=5.8),PF134651=zf-H2C2_2=WD(100=5.8),PF134651=zf-H2C2_2=WD(100=5.8)

Main Inclusion Isoform:

ENSMUSP00000002336